Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1282 ATGTCTGCTTGTTTTCCTTTTTACTGTTATTACCGATCTGGGGGTTTCTTGAATATTTTCCACGGTCTTTCTGCTAGCTTGTGGGTTCTCACTGTCTGTTTCAAAACCTTACATTTTCCAGATTTATATAGCTCTAGAAGTCCGGGGTCTAGGACTGAGATGGGTAGGAAGATTCAAATGAAAAGAATTGAAGATGCAGGTAGCCGTCAAGTGACCTTCACGAAGCGTAGAAATGGGCTTCTGAAAAAAGCCTACGAGCTGTCCGTTCTCTGTGACGCCCAGGTAGCTGTGATCATCTTTTCACAAAAAGGCAGGCTCTATGAGTTCTCAAGTTCTGACACCAGAAAGATTATTGAGCGATATTGTAAATATGCCAAAGATGTTCATAACAATAAGTTTGAAGAGGAGCAACATATCCAGCAACTGAAGTCTAAATGTGCAAGTATGGCAAGGAAGATTGAGTTTCTTCAACTTTATCAGAGGAAGCTATTGGGACATGGCTTGAATTCTTGCTCCTATGACGAACTCCAATCAATTGAGAGCCAGCTTGAGAAAAGCTTGCTTAATGTGAGGCTGAGAAAGGATCAGCTATTTAGGGAGCAACTTGAGCAAGTGGAAAACAAGGAAAAGAAGTTATTTGAAGATAGAGCAAGGTTCAGTGAAATGTGTGGGGAAAAGCCATCGCAGAAATGGGCTAAACTCAAAGAAGCAGCGCCCTACAGTTCAAGTCCAAGTAGCCAAAGTTCTGATGTGGAGACTGAATTGTACATTGGATTACCAGAGAAGCGCTGCCGATAG 798 0.4211 MSACFPFYCYYRSGGFLNIFHGLSASLWVLTVCFKTLHFPDLYSSRSPGSRTEMGRKIQMKRIEDAGSRQVTFTKRRNGLLKKAYELSVLCDAQVAVIIFSQKGRLYEFSSSDTRKIIERYCKYAKDVHNNKFEEEQHIQQLKSKCASMARKIEFLQLYQRKLLGHGLNSCSYDELQSIESQLEKSLLNVRLRKDQLFREQLEQVENKEKKLFEDRARFSEMCGEKPSQKWAKLKEAAPYSSSPSSQSSDVETELYIGLPEKRCR 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1282 265 ProSitePatterns MADS-box domain signature. 55 109 IPR002100 GO:0003677|GO:0046983
Glsi12g1282 265 ProSiteProfiles MADS-box domain profile. 56 113 IPR002100 GO:0003677|GO:0046983
Glsi12g1282 265 MobiDBLite consensus disorder prediction 226 265 - -
Glsi12g1282 265 ProSiteProfiles K-box domain profile. 139 229 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi12g1282 265 Gene3D - 65 147 IPR036879 GO:0003677|GO:0046983
Glsi12g1282 265 CDD MADS_MEF2_like 56 127 IPR033896 GO:0000977|GO:0045944
Glsi12g1282 265 PRINTS MADS domain signature 55 75 IPR002100 GO:0003677|GO:0046983
Glsi12g1282 265 PRINTS MADS domain signature 90 111 IPR002100 GO:0003677|GO:0046983
Glsi12g1282 265 PRINTS MADS domain signature 75 90 IPR002100 GO:0003677|GO:0046983
Glsi12g1282 265 FunFam MADS-box transcription factor MADS-MC 65 137 - -
Glsi12g1282 265 Pfam K-box region 135 223 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi12g1282 265 SMART madsneu2 54 112 IPR002100 GO:0003677|GO:0046983
Glsi12g1282 265 PANTHER SERUM RESPONSE FACTOR HOMOLOG 54 228 - -
Glsi12g1282 265 MobiDBLite consensus disorder prediction 239 253 - -
Glsi12g1282 265 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 62 109 IPR002100 GO:0003677|GO:0046983
Glsi12g1282 265 SUPERFAMILY SRF-like 56 127 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1282 Glsi-ChrGlsi12 30402250 30418353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1282 57 263 MADS-box Gene Family AT5G51860 48.558 4.85e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi12g1282 K-box 8.1e-20 No_clan