Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1271 ATGTCACAGAGTGAGGGTGAGAAGCTTGAAGATGGAGAGGTCAACATGGCTGCTTGGATTCTTGGTGTCAAAAATCTTAAAATCCAACCGTACGCACTTCCTTCCTTAGGCCCCCATGATGTTAAAGTTCGAATTAAAGCCGTGGGTATTTGTGGAAGTGACGTTCATTACTATGAAACAATGAGATGTGCTAATTTTATAGCGAACAAACCCATGGTGCTGGGACATGAGTGTGCTGGGATCATTGAAGAAGTTGGGTGTGGAGTTAAATCTCTTGCAGTGGGGGAAAGGGTGGCTTTGGAGCCAGGAATCAGTTGCCAGCGATGCAATTTCTGCAGAGATGGCCGCTACAATCTCTGTCGCCAAATGAAATGTTTTGGGTCTGCCTCAAGTTCAACTAACGGTTCTCTTGCCAATAAGGTGGTGCATCCCGAAAATTTATGTTATAAGCTACCTGACAATGTGAGCTTGGAGGAAGGAGCTATGTGTGAGCCACTCAGTGTTGGAGTGCATGCTTGTCGCCGTGCTAATATTAGCCCTGACACAAATGTATTAGTGGTAGGAGCAGGACCTATAGGCCTTGTTGTATTTTTGGCTGCCCGTGCATTTGGAGCCCCAAGAATTGTCATTGTTGATGTCGATGACTGCCGGTTATCAATTGCAAAGAATCTTGGTGCAGACGAGATAGTTCATGTTTCATCAAACAACCAGGACATGAAGGAAGAAGTGGAGAAGATCCAAAAAGCAATGGATTGTAGGATTGATGTGAGTTTTGATTGTGTAGGGTACAACAAAACCATGTCAACAGCCCTGAATGCCACTCGCTCCGGAGGCAAAGTCTGCCTCATCGGATTAGCCCAGACTCAGATGACTGTACCACTCACTCCAGCAGCTGTGAGAGAGGTGGATGTAATAGGGATATTCAGGTACAGAAACACCTGGCCCCTTTGCATTGAGTTATTACGCTCTGGCAAGATTGACATCAAGCCCCTCATAACTCACCGATTCCGATTCTCACAGAATGAGCTGGAAGAGGCCTTTGAAACCAGTGCTCGAGGGGGTAACGCTATTAAGATCATGTTCAATCTCTAG 1092 0.4597 MSQSEGEKLEDGEVNMAAWILGVKNLKIQPYALPSLGPHDVKVRIKAVGICGSDVHYYETMRCANFIANKPMVLGHECAGIIEEVGCGVKSLAVGERVALEPGISCQRCNFCRDGRYNLCRQMKCFGSASSSTNGSLANKVVHPENLCYKLPDNVSLEEGAMCEPLSVGVHACRRANISPDTNVLVVGAGPIGLVVFLAARAFGAPRIVIVDVDDCRLSIAKNLGADEIVHVSSNNQDMKEEVEKIQKAMDCRIDVSFDCVGYNKTMSTALNATRSGGKVCLIGLAQTQMTVPLTPAAVREVDVIGIFRYRNTWPLCIELLRSGKIDIKPLITHRFRFSQNELEEAFETSARGGNAIKIMFNL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1271 363 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 75 89 IPR002328 GO:0008270|GO:0016491
Glsi12g1271 363 SMART PKS_ER_names_mod 22 361 IPR020843 GO:0016491
Glsi12g1271 363 Pfam Zinc-binding dehydrogenase 191 321 IPR013149 -
Glsi12g1271 363 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 154 327 IPR036291 -
Glsi12g1271 363 Gene3D - 168 308 - -
Glsi12g1271 363 CDD sorbitol_DH 17 362 IPR045306 GO:0016616
Glsi12g1271 363 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Glsi12g1271 363 SUPERFAMILY GroES-like 16 189 IPR011032 -
Glsi12g1271 363 FunFam Sorbitol dehydrogenase 168 308 - -
Glsi12g1271 363 PANTHER SORBITOL DEHYDROGENASE 15 363 - -
Glsi12g1271 363 Coils Coil 229 249 - -
Glsi12g1271 363 Gene3D - 24 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1271 Glsi-ChrGlsi12 30309597 30311909 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1271 28 296 Monolignol Biosynthesis Gene Families AT4G37980 26.619 3.30e-16 76.6