Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1270 ATGGGTAAAGGGGGGATGTCGCGAGAAGATCATGAGGAAGGTAAATATGGTGGAGAAGAGAATATGGCTGCTTGGCTTGTTGGTATCAATACGCTCAAAATTCAACCTTTCAAGCTTCCTACTCTGGGACCCCATGATGTCAGAGTTAGAATGAAGGCTGTTGGTATCTGTGGCAGTGATGTTCACTACCTCAAGACTCTGAGATGTGCGGATTTTATAGTTAAAGAACCAATGGTCATTGGTCATGAGTGTGCTGGGATCATAGAAGAAGTTGGTAGTCAGGTTAAGAATCTAGTGCCTGGTGACCGTGTGGCAATTGAACCTGGGATTAGTTGCTGGCGTTGTGACCTCTGCAAAGAAGGTCGATATAATTTATGCCCTGAAATGAAGTTTTTTGCTACTCCTCCAGTTCACGGTTCCCTTGCTAATCAGATAGTGCATCCTGCAGACCTATGTTTTAAACTACCAGACAATGTGAGCTTAGAGGAGGGGGCAATGTGTGAACCCTTGAGTGTTGGTGTTCATGCTTGTCGCCGCGCTAATATTGGACCAGAAACAAGTGTGTTGATAATGGGAGCAGGACCCATAGGGCTTGTCACAATGCTTTCCGCTCGTGCTTTTGGGGCTCCTAGGATCGTCATTGTGGATGTGGATGACCATCGTTTATCTGTTGCCAAAACTCTTGGTGCGGACGAGATTGTTAAAGTTTCAACAAACATTCAGGATGTAACTGAAGAAGTGGCACAGATACACAAGGCTATGGGAGCTTTCGTGGATGTTAGCTTTGATTGTGCAGGTTTTAACAAAACCATGTCTACGGCATTGGGTGCTACTCGTCCAGGTGGCAAAGTCTGCTTAGTGGGAATGGGTCATAGCGAAATGACTGTTCCACTCACACCAGCTGCTGCAAGGGAAGTTGATGTGATTGGAATTTTCCGGTATAAGAACACATGGCCTCTTTGCCTCGAGTTTCTAAGGAGTGGAAAGATAGACGTAAAACCCCTTATAACTCACAGGTTTGGGTTCTCTCAAAAGGAGGTGGAAGAAGCCTTTGAAACTAGTGCTGGTGGTGGCAATGCGATTAAGGTTATGTTCAATATGTAG 1104 0.4538 MGKGGMSREDHEEGKYGGEENMAAWLVGINTLKIQPFKLPTLGPHDVRVRMKAVGICGSDVHYLKTLRCADFIVKEPMVIGHECAGIIEEVGSQVKNLVPGDRVAIEPGISCWRCDLCKEGRYNLCPEMKFFATPPVHGSLANQIVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETSVLIMGAGPIGLVTMLSARAFGAPRIVIVDVDDHRLSVAKTLGADEIVKVSTNIQDVTEEVAQIHKAMGAFVDVSFDCAGFNKTMSTALGATRPGGKVCLVGMGHSEMTVPLTPAAAREVDVIGIFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSAGGGNAIKVMFNM 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1270 367 FunFam Sorbitol dehydrogenase 172 312 - -
Glsi12g1270 367 SUPERFAMILY GroES-like 21 193 IPR011032 -
Glsi12g1270 367 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 81 95 IPR002328 GO:0008270|GO:0016491
Glsi12g1270 367 PANTHER SORBITOL DEHYDROGENASE 20 367 - -
Glsi12g1270 367 CDD sorbitol_DH 23 367 IPR045306 GO:0016616
Glsi12g1270 367 SMART PKS_ER_names_mod 28 365 IPR020843 GO:0016491
Glsi12g1270 367 Pfam Zinc-binding dehydrogenase 195 325 IPR013149 -
Glsi12g1270 367 Gene3D - 172 312 - -
Glsi12g1270 367 Pfam Alcohol dehydrogenase GroES-like domain 44 155 IPR013154 -
Glsi12g1270 367 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 331 IPR036291 -
Glsi12g1270 367 Gene3D - 31 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1270 Glsi-ChrGlsi12 30304893 30308451 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1270 34 300 Monolignol Biosynthesis Gene Families AT4G37980 28.058 3.29e-19 85.1