Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi12g1269 | ATGGATGTAGATGGGAGCAATAAGCGCGTGTTCCAGCGTCTCCGGGGGCCTCCGGCCGATACCAGGAACCAGAAAGTATGTTATCATTGGCTGGCAGGCAAGTGCAATAGGCATCCGTGCTCGTTTCTGCACAGTGAATTACCTCCTCCAACCGCCAATGGGATGTCTTCGAAACGGCCCCATGGGTCTGCTGATGATTCAGGGTTCTCAGGTCCACGGCGGAGTCCGAATTTTAGTGGCGCTTCAACGTGGGGCCGGGTTCATGGTGGTGGAGGAGCCGTAGGTGGTAGTAGAGTATTTAGGAAGACTGAAAAAGTTTGTAATTATTGGGTTCAGGGGAGTTGTAGTTATGGAGATAGGTGTAAGTACCTTCACTCTTGGAGTTTAGGTGACGGTTTTTCTTTACTGACACAGCTTGAAGGGCATCAGAAGGTTGTGAGTGGAATAGCTCTGCCATCTGGTTCTGATAAGCTTTATACTGGAAGTAAGGATGAGACTGTAAGGCTTTGGGACTGCCAGTCTGGACAGTGTATCGCCACGATCCCTCTCAGTTGCGAAGTGGGTTGTATGATCAGTGAAGGTCCTTGGGTTTTTGTTGGGATACCTAATTTTGTCAAGGCCTGGAACACTCAAAACTCAATGGAGCTAATCCTGAGTGGTCCTGTTGGACAAGTTTATGCGTTGGCTGTTGGTAATGATATGCTCTTTGCTGGTACACAGGATGGGTCTATATTAGCATGGAAGTTTAATGTGGTTGCCAACTGCTTTGAGCCCGTTACATCACTCAAAGGTCATTCCCTTGCTGTTGTTTCATTAGTTGTTGGAGCTAATAGGCTCTACTCTGGTTCCATGGACCATACAATAAGAGTCTGGAACCTTGAGACTTTGCAGTGTTTACAGACACTAACTGAGCATACATCAGTTGTGATGTCTGTTCTTTGCTGGGACCAGTTTCTTTTATCTGGTTCACTAGACAAAACAGTAAAGGTATGGGTTGCTACGGAAAGTGGAAACTTGGAAGTGACTTATACTCACAATGAAGAACATGGTGTCCTTACCCTCTGTGGAATGCACGATTCACAAGGCAAGCCCATTTTGCTGTGCTCTTGCAATGATAATACTGTGCGCCTCTATGATTTGCCATCATTCGCAGAGAGAGGTAAAATTTTCAATAAGCAAGAGGTCCGAGCTATTCAGGTGGGTCCTAGTGGCATATTCTTCACGGGTGATGGAACAGGTCAAGTGAGAGTGTGGAATTGGTCGACGGAGCCATCTAATAGCAGCATTCAATAA | 1293 | 0.4656 | MDVDGSNKRVFQRLRGPPADTRNQKVCYHWLAGKCNRHPCSFLHSELPPPTANGMSSKRPHGSADDSGFSGPRRSPNFSGASTWGRVHGGGGAVGGSRVFRKTEKVCNYWVQGSCSYGDRCKYLHSWSLGDGFSLLTQLEGHQKVVSGIALPSGSDKLYTGSKDETVRLWDCQSGQCIATIPLSCEVGCMISEGPWVFVGIPNFVKAWNTQNSMELILSGPVGQVYALAVGNDMLFAGTQDGSILAWKFNVVANCFEPVTSLKGHSLAVVSLVVGANRLYSGSMDHTIRVWNLETLQCLQTLTEHTSVVMSVLCWDQFLLSGSLDKTVKVWVATESGNLEVTYTHNEEHGVLTLCGMHDSQGKPILLCSCNDNTVRLYDLPSFAERGKIFNKQEVRAIQVGPSGIFFTGDGTGQVRVWNWSTEPSNSSIQ | 430 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi12g1269 | 430 | PANTHER | - | 67 | 427 | IPR044715 | - | |
| Glsi12g1269 | 430 | Gene3D | - | 114 | 216 | IPR015943 | GO:0005515 | |
| Glsi12g1269 | 430 | PRINTS | G protein beta WD-40 repeat signature | 319 | 333 | IPR020472 | - | |
| Glsi12g1269 | 430 | PRINTS | G protein beta WD-40 repeat signature | 158 | 172 | IPR020472 | - | |
| Glsi12g1269 | 430 | PRINTS | G protein beta WD-40 repeat signature | 279 | 293 | IPR020472 | - | |
| Glsi12g1269 | 430 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 262 | 301 | IPR001680 | GO:0005515 | |
| Glsi12g1269 | 430 | SUPERFAMILY | WD40 repeat-like | 125 | 424 | IPR036322 | GO:0005515 | |
| Glsi12g1269 | 430 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 262 | 295 | - | - | |
| Glsi12g1269 | 430 | SMART | WD40_4 | 295 | 332 | IPR001680 | GO:0005515 | |
| Glsi12g1269 | 430 | SMART | WD40_4 | 336 | 379 | IPR001680 | GO:0005515 | |
| Glsi12g1269 | 430 | SMART | WD40_4 | 255 | 292 | IPR001680 | GO:0005515 | |
| Glsi12g1269 | 430 | SMART | WD40_4 | 211 | 248 | IPR001680 | GO:0005515 | |
| Glsi12g1269 | 430 | SMART | WD40_4 | 132 | 171 | IPR001680 | GO:0005515 | |
| Glsi12g1269 | 430 | SMART | WD40_4 | 382 | 419 | IPR001680 | GO:0005515 | |
| Glsi12g1269 | 430 | FunFam | Zinc finger CCCH domain-containing protein 48 | 219 | 427 | - | - | |
| Glsi12g1269 | 430 | Gene3D | - | 217 | 430 | IPR015943 | GO:0005515 | |
| Glsi12g1269 | 430 | Pfam | WD domain, G-beta repeat | 257 | 292 | IPR001680 | GO:0005515 | |
| Glsi12g1269 | 430 | Pfam | WD domain, G-beta repeat | 297 | 331 | IPR001680 | GO:0005515 | |
| Glsi12g1269 | 430 | Pfam | WD domain, G-beta repeat | 135 | 171 | IPR001680 | GO:0005515 | |
| Glsi12g1269 | 430 | SUPERFAMILY | CCCH zinc finger | 102 | 126 | IPR036855 | GO:0046872 | |
| Glsi12g1269 | 430 | SMART | c3hfinal6 | 21 | 46 | IPR000571 | GO:0046872 | |
| Glsi12g1269 | 430 | SMART | c3hfinal6 | 103 | 127 | IPR000571 | GO:0046872 | |
| Glsi12g1269 | 430 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 139 | 171 | - | - | |
| Glsi12g1269 | 430 | FunFam | Zinc finger CCCH domain-containing protein 48 | 127 | 217 | - | - | |
| Glsi12g1269 | 430 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 139 | 180 | IPR001680 | GO:0005515 | |
| Glsi12g1269 | 430 | Pfam | Zinc finger domain | 107 | 125 | - | - | |
| Glsi12g1269 | 430 | ProSiteProfiles | Zinc finger C3H1-type profile. | 21 | 47 | IPR000571 | GO:0046872 | |
| Glsi12g1269 | 430 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 279 | 293 | IPR019775 | - | |
| Glsi12g1269 | 430 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 302 | 331 | IPR001680 | GO:0005515 | |
| Glsi12g1269 | 430 | ProSiteProfiles | Zinc finger C3H1-type profile. | 101 | 128 | IPR000571 | GO:0046872 | |
| Glsi12g1269 | 430 | MobiDBLite | consensus disorder prediction | 51 | 84 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi12g1269 | Glsi-ChrGlsi12 | 30293786 | 30304218 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi12g1269 | 234 | 422 | Miscellaneous Gene Families | AT5G08390 | 26.633 | 2.61e-08 | 54.3 |
Transcription factors information