Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1267 ATGAAGCAGATATTCTTATACAAAAGCGTGTGCATCCCTCCTTACCATCCCCAACGAGAGCAGTTTAGCATGATGTCCATGGCCTCTGCAATTCTCTGTTTCCCTCCTTCTCCCGCTCGATTCTGCCCTCTTAAACCAACCCTCTTATTCCCCTCTCTTTCCCCACTTCTTCTCCAATTAAACTCGCTCCCCTCTTCTCCGCTCTTCCTTCGTTCCACACTCCGTAGTAGAACTCTGTCAAGGAAACTTACAACCCCACTTGCCTATGTGACTGGACCCGCATCGGACCCCATTTTCAGTGAGTCCGATCCTAAGATAGATGTCTCGGATCCTCGGCCGGAGAAACCCCAGCCACCGAGCGTGATAAGCTGGGAGCTTCTGTCGAGGCTTCTGATGAAACACAAATTGCGGCTTGCCATTTTGGCTGTAACTCTCATTTGTTGCACTAGTTGTACTCTTTCTATGCCCATATTTTCTGGCCAATTTTTTGAAGTTCTAATCGGTGCTAGACCAGAGCCATTATGGAGGCTTCTCAGTAAGGTTGGAATTCTGTACGCCATGGAGCCCCTTTTAACTGTTATTTTTGTTATAAACATGAACATCGTGTGGGAGAAGGTTATGTCAACACTAAGAGCCCAGATCTTTGGAAGAATATTGATTCAGAAGGTGGAATTTTATGACAGATACAAGGTTGGTGAACTCACTGGTTTGTTAACATCTGATTTGAGTTCTCTTAAAGATATTGTGAGTGAGAATGTTTCAAGGGATCGTGGATTCAGGGCATTATCTGAGGTCATTGGGACAATATGCATTCTTTTTGCTTTATCACCTCAACTTGCACCAATTCTGGGCATTCTGATGCTCACAGTTTCTGTTTTAGTTGCTGTCTACAAGAGATCAACTCTGCCAGTTTTTAAAGCACATGGATTCGCTCAAGCATCTATATCTGACTGTGTAACAGAAACATTTTCTGCTATTCGTACAGTAAGATCCTTTGGTGGTGAGAAACGCCAAATGTTTACATTTGCTAATCAGGTTCTTTCTTACCAATCAAGTGGGATAAAGCTTGGAATTTTTAAATCTGTAAATGAATCCTTGACTAGAGTTGCTGTTTATATTTCTTTGCTGGCGTTATATTGTCTTGGAGGAAGCAAGGTTAAAGCGGGTGAACTCTCTGTTGGAACTGTGGCATCTTTTATTGGATATACTTTCACATTAACGTTTTCTGTTCAAGGGCTGGTTAATACTTTTGGAGATCTTCGTGGAGCTCTTGCTGCTGTTGAGAGGATCAACTCTGTTTTCTCCGGGGCTCAAATTGATGAAGCCCTTGCTTACGGCTTAGAAAGAGAATTGAAACAGAAAGAACTGGATGATGATAACTATAAATTGTTCTTCTCTAATGATTCTGCTGAGAGAAACCAAAACAAATATTTGCATTACATGTCAGCACTGAAGTCGTCAAGCAATTTATATAGCTTAGCTAGGTCTGGCAATGTTTGTCTTGAAGATGTGTATTTCTCTTATCCTTTGAGGCAAGACGTGGAAATCTTAAGTGGCTTAAATTTAACACTGAAATGTGGAACTGTAACTGCATTGGTGGGTTCTAGTGGTGCAGGCAAAAGTACCATAGTACAGCTATTGGCTCGTTTTTATGAGCCGGCAAGAGGTCGTATAACAGTTGCAGGAGAGGATGTCCGAACATTTGACAAGAGTGAATGGGCTCGGGTTGTCTCTATTGTAAATCAAGAGCCTGTTCTATTTTCGGTGTCTGTTGGAGAAAATATTGCATATGGGCTTCCAGATGATAATGTTTCTAAAGATGATGTTATCAAGGCAGCAAAAGCTGCAAATGCTCATGACTTCATAATTTCACTTCCGCAGGGCTATGACACACTTGTTGGTGAGCGTGGGGGCCTACTTAGTGGGGGACAGAGGCAGAGAATTGCTATTGCGCGAGCTCTCCTAAAGGATGCCCCAATCCTCATCCTTGATGAGGCCACGAGTGCCCTTGATGCAGTTAGTGAGCGCTTGGTCCAGGATGCTCTCGACCATTTGATGAAGGAGAGGACAACGTTAGTAATAGCTCACCGATTGAGCACAGTTCAGAATGCCCATCAAATTGCACTCTGTTCTGATGGGAGAATTGCAGAACTGGGCACGCACTTTGAGTTATTGGCTAAAAAGGGCCAATATGCTTCACTGGTTAGCACCCAAAGGCTTGCATTTGAATGA 2232 0.4315 MKQIFLYKSVCIPPYHPQREQFSMMSMASAILCFPPSPARFCPLKPTLLFPSLSPLLLQLNSLPSSPLFLRSTLRSRTLSRKLTTPLAYVTGPASDPIFSESDPKIDVSDPRPEKPQPPSVISWELLSRLLMKHKLRLAILAVTLICCTSCTLSMPIFSGQFFEVLIGARPEPLWRLLSKVGILYAMEPLLTVIFVINMNIVWEKVMSTLRAQIFGRILIQKVEFYDRYKVGELTGLLTSDLSSLKDIVSENVSRDRGFRALSEVIGTICILFALSPQLAPILGILMLTVSVLVAVYKRSTLPVFKAHGFAQASISDCVTETFSAIRTVRSFGGEKRQMFTFANQVLSYQSSGIKLGIFKSVNESLTRVAVYISLLALYCLGGSKVKAGELSVGTVASFIGYTFTLTFSVQGLVNTFGDLRGALAAVERINSVFSGAQIDEALAYGLERELKQKELDDDNYKLFFSNDSAERNQNKYLHYMSALKSSSNLYSLARSGNVCLEDVYFSYPLRQDVEILSGLNLTLKCGTVTALVGSSGAGKSTIVQLLARFYEPARGRITVAGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDDNVSKDDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKDAPILILDEATSALDAVSERLVQDALDHLMKERTTLVIAHRLSTVQNAHQIALCSDGRIAELGTHFELLAKKGQYASLVSTQRLAFE 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1267 743 MobiDBLite consensus disorder prediction 94 118 - -
Glsi12g1267 743 CDD ABC_6TM_TAP_ABCB8_10_like 143 430 - -
Glsi12g1267 743 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 107 741 IPR039421 -
Glsi12g1267 743 SUPERFAMILY ABC transporter transmembrane region 127 430 IPR036640 GO:0005524|GO:0016020
Glsi12g1267 743 CDD ABC_MTABC3_MDL1_MDL2 501 738 - -
Glsi12g1267 743 ProSitePatterns ABC transporters family signature. 640 654 IPR017871 GO:0005524|GO:0016887
Glsi12g1267 743 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 139 422 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi12g1267 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 491 738 IPR027417 -
Glsi12g1267 743 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 499 737 IPR003439 GO:0005524
Glsi12g1267 743 Pfam ABC transporter 517 668 IPR003439 GO:0005524
Glsi12g1267 743 SMART AAA_5 526 720 IPR003593 GO:0016887
Glsi12g1267 743 Pfam ABC transporter transmembrane region 139 409 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi12g1267 743 Gene3D - 497 740 IPR027417 -
Glsi12g1267 743 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 497 741 - -
Glsi12g1267 743 Gene3D ABC transporter type 1, transmembrane domain 111 435 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1267 Glsi-ChrGlsi12 30283912 30290460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1267 204 743 Calmodulin-binding Proteins AT2G36910 34.854 1.34e-74 261