Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1263 ATGTTTGCCTTCACTCTTTATTCCAACCCACATCCGTTTAAGTCGGCGGCTTCGTCAGACAAGGACATGTTGTTAGCTGCAAGTCACCCGAAGAGGCGTGCCGGAAGGAAGAAGTTCAGGGAGACTCGCCACCCGGTTTATAGGGGCGTGAGGAGGAGGAACTCTGATAAGTGGGTGTGTGAAGTGCGCGAGCCTAATAAGAAGACTAGGATTTGGCTCGGGACATTTCCGACTGCGGAAATGGCGGCACGGGCACATGACGTGGCAGCAATGGCTCTAAGGGGCCGGTCTGCTTGTCTTAATTTTGCGGACTCAGCATGGCGGTTGCCGGTTCCGGCATCGGCGGAGGCGAAGGAAATTCAGAAGGCAGCAACGAAGGCGGCCGAGGCATTCCGGCCAGGGATGGAGTTGGAGAATGAGGAGGCGGTCAGAACGGTGGAAGCGGGGGAGCAAAGTATGTTTTATATGGATGAAGAAAAGGCAGTGTCGGGGATGCCGGAATTGTTGAGGAACATGGCGGATGCTGTGCTGATGTCTCCAACTCTTAGCTTCGGGGATGAATATGGTGGTGCGGACGTGGAGACGGATGATGCTGAAGTGTCATTATGGAGTTATTCCATTTAA 624 0.5385 MFAFTLYSNPHPFKSAASSDKDMLLAASHPKRRAGRKKFRETRHPVYRGVRRRNSDKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAMALRGRSACLNFADSAWRLPVPASAEAKEIQKAATKAAEAFRPGMELENEEAVRTVEAGEQSMFYMDEEKAVSGMPELLRNMADAVLMSPTLSFGDEYGGADVETDDAEVSLWSYSI 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1263 207 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Glsi12g1263 207 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Glsi12g1263 207 FunFam Ethylene-responsive transcription factor 2 45 104 - -
Glsi12g1263 207 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Glsi12g1263 207 SUPERFAMILY DNA-binding domain 46 105 IPR016177 GO:0003677
Glsi12g1263 207 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Glsi12g1263 207 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Glsi12g1263 207 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Glsi12g1263 207 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 15 205 IPR045277 GO:0003700
Glsi12g1263 207 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1263 Glsi-ChrGlsi12 30272080 30272703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1263 13 205 AP2-EREBP Transcription Factor Family AT4G25470 61.058 4.86e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi12g1263 AP2 5.6e-15 CL0081