Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1262 ATGGATAGACACCCTCGCGATGAAAATCCAGTCCCTTCCTCTGTCATCTCCTCACAACCCACTCCGTCTCAAGGCTCGTCATCTCTACCAACCGGACGCCACTCTCGGTACCGGGGAATCCGCTGCCGGGGCGGGAAATGGGTGTCGGAGATACGTGAGCCACGCAAAACCACTCGCATTTGGTTGGGTACCTACCCCACGCAGGAGATGGCAGCTGCTGCCTTTGATGTCGCTGCTTTGGCATTGAAAGGGCCAAACGTACCCCTCAACTTCCCAAACTCTATTCTTTCGTATCCGATTCCGGCGTCCTTGTCCTCAATTGATATCCGGGCGGCTGCCGCCGCCGCTGCTGAGGCTAGGCTAGTGAAGCCTGACACTGACAGTGGAGGAGATATTCAGAGGCAGCAATACATCGACGAGGATGAGCTATTGAATATGCCGAATTTGTTGGATGATATGGCCAGGGGAATGCAGGTAAGTCCGCCTAGGATGAAGTCCCCACCTGCCGATGATTCGCCCGGGAATTCAGATGGAGATAACCTTTGGAGTTATGCTTATTGA 561 0.5419 MDRHPRDENPVPSSVISSQPTPSQGSSSLPTGRHSRYRGIRCRGGKWVSEIREPRKTTRIWLGTYPTQEMAAAAFDVAALALKGPNVPLNFPNSILSYPIPASLSSIDIRAAAAAAAEARLVKPDTDSGGDIQRQQYIDEDELLNMPNLLDDMARGMQVSPPRMKSPPADDSPGNSDGDNLWSYAY 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1262 186 MobiDBLite consensus disorder prediction 1 37 - -
Glsi12g1262 186 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Glsi12g1262 186 SMART rav1_2 36 98 IPR001471 GO:0003700|GO:0006355
Glsi12g1262 186 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Glsi12g1262 186 MobiDBLite consensus disorder prediction 154 186 - -
Glsi12g1262 186 SUPERFAMILY DNA-binding domain 35 94 IPR016177 GO:0003677
Glsi12g1262 186 MobiDBLite consensus disorder prediction 11 33 - -
Glsi12g1262 186 ProSiteProfiles AP2/ERF domain profile. 36 92 IPR001471 GO:0003700|GO:0006355
Glsi12g1262 186 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 184 IPR045277 GO:0003700
Glsi12g1262 186 CDD AP2 35 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1262 Glsi-ChrGlsi12 30264464 30265024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1262 31 184 AP2-EREBP Transcription Factor Family AT5G52020 55.367 1.17e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi12g1262 AP2 2.1e-09 CL0081