Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1261 ATGGGATTACCACTTTCTCGAGGTCGACACACTAGTTTGTCGATGCAAAAATTTCTTCTTCGTCGAAAGCAAAGAGATTGTGAAAATCTTTGCGTACGTGGAGCTAGTGATTTTCTTTGGATTTGTTTTCTTTTTTTGGAGGATTTGTGTATCATGATTTCTGGTCGGTGTGCAGCTTGCAAGAATCAAAGAAGAAGGTGCCCTTCCGATTGCGTTTTCTCTCCCTATTTTCCTGCCAATGATCCTCAAAGATTTGCCTGCGTTCACAGAATATATGGTGGCAGCAATGTTGGGAAAATGCTTCAGCAAATTCCACCCAATGTCCGAGGACAGGCAGCAGATACCTTATATTTTGAAGCGCAATGTAGAATTCAAGACCCCGTGCATGGTTGTGCCGGGATTATCTCTCATTTGTATCAACAAGTCCATAATACAGAAAGTGAGCTAGCAAAAGTCCAAGCTCAGATTGCCTTCCACAAGTCCCAGATTTCAAAAGTTGAACCTGAATCAAGCTTCCATGTCTTCCCAGCACAAAGCAGCATAGAGCAGTTTCATTTTGGCCCTTCAAGACTAACAACTCTCAGCCGGGTGCTTTCTGCGAAGGGAAAATGCAGCATATTTTCTGTGGAAAATTTTGAGTATGATGCCCAGCAGTCTGATCTAGAGTGGATATTTAGAAGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGATTTGCTTTTATCTATATGAAAGATGAGAGATGCTGA 753 0.421 MGLPLSRGRHTSLSMQKFLLRRKQRDCENLCVRGASDFLWICFLFLEDLCIMISGRCAACKNQRRRCPSDCVFSPYFPANDPQRFACVHRIYGGSNVGKMLQQIPPNVRGQAADTLYFEAQCRIQDPVHGCAGIISHLYQQVHNTESELAKVQAQIAFHKSQISKVEPESSFHVFPAQSSIEQFHFGPSRLTTLSRVLSAKGKCSIFSVENFEYDAQQSDLEWIFRRYGKVDRVDMKSGFAFIYMKDERC 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1261 250 Pfam Lateral organ boundaries (LOB) domain 56 153 IPR004883 -
Glsi12g1261 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 250 IPR000504 GO:0003723
Glsi12g1261 250 ProSiteProfiles LOB domain profile. 55 156 IPR004883 -
Glsi12g1261 250 Gene3D - 199 250 IPR012677 -
Glsi12g1261 250 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 56 171 - -
Glsi12g1261 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 249 IPR000504 GO:0003723
Glsi12g1261 250 Coils Coil 135 162 - -
Glsi12g1261 250 SUPERFAMILY RNA-binding domain, RBD 206 248 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1261 Glsi-ChrGlsi12 30254286 30264268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1261 52 167 AS2 family AT3G26660 60.345 8.51e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Glsi12g1261 LOB 1.5e-36 No_clan