Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1243 ATGGGCTTTCTCCGGCGTCTCTTCGGCGGCAAAAAACCCGGTCAATCTGCGGGAGGGTCTGGTTCTAAACCAGGTAAGGAAAAGAGAAGATGGAGCTTCGGCAAACCGAGCAAGGACAAGTCTCACGTTAAATCATCTGGTCTCAACGATTTCGAATCCTCCACTGCATTCAGTGACTCTTTAGATGCTAATAAGCATGCTATAGCTGTAGCGGCGGCTACGGCGGCCGTAGCTGAGGCCGCACTGGCCGCTGCCCATGCCGCAGCAGAGGTAGTCAGACTAACAAGCGGTGGAAACGGCGCCGGCGCTTCCGGCACCGTCACTCGACCCGTGACTGCGACACACGTCAGCGCGAGCCAACGCCGATGGATGGAGGAAGTAGCCGCTGTTAAAATACAGTCTGCTTTTCGTGCCTACCTGGCAAGGAGGGCGTTGCGAGCGCTAAAAGCTTTGGTCAAGTTGCAAGCACTGGTGAGGGGCCACATAGTAAGAAAGCAAACTGCAGACATGCTGAGGCGCATGCAGACATTGGTTCGACTGCAGACCCGGGCACGTGCAAGTCGTGTGCACTTGTCAGACAATATACATTCTACCAAAGCTTCTCTATTTAATCACCCTGTCCCTGAAGATCATGAGCACCTGCCTCGTGCCTATAGTACGAAATTTGATGGATCTCCCATCCTGAAGAGATGTAGCTCCAATGCAAATTTTAGGTACATCGATCCAGAAAGAGCACAGTTTGGATCACATTGGTTAGATCGTTGGATGGAAGAAAGTGTTTGGAACCGCTCCCGAGATGCTTCATTGAAAAATGGGCACACTGATGATGAGAAGAGTGACAAGATTCTTGAAGTAGATACTTGGAAGCCACACTTTACCTCTCACCGTAGTAGCAGCTCCTTTCATGCGTCCCAACATTATCTGGCTTCTGATTATAATAATGAGATGGCTTATGACTCTCCATCAAAAAGGTCAACAAAAGCTCTAAATCAAAGTCTGAGCTCTCTGAAGTTTCAGAAAGGAAAAGATGTAGCCTCACGAACTGCTGAGAATAGTCCACAAATATTTTCTGCCTCATCTAGACCTGGAAGTGGTGCTAGGAGAGGTCCCTTCACACCCACAAGGAGTGAGTGTTCTTGGGGTTTCTTTAGTGGGTACTCAGGTCATCCCAATTACATGGCAAACACTGAATCCTCGCGGGCTAAGGTTAGGTCACAGAGTGCTCCTAGGCAAAGGTTGGAGTTTGAGAGATATGGTTCAACTGGGAGGTCTGTTCAGGGGCTTGGGGATGCATTGCCAATTTCAGATCGGGATGCTGATTTCAGGAGCAATACCTATCCAGCTTCAAGCCGCTTGAACAGAATTGGGAGTACCAATTTAAGGTGA 1386 0.4928 MGFLRRLFGGKKPGQSAGGSGSKPGKEKRRWSFGKPSKDKSHVKSSGLNDFESSTAFSDSLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGGNGAGASGTVTRPVTATHVSASQRRWMEEVAAVKIQSAFRAYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVRLQTRARASRVHLSDNIHSTKASLFNHPVPEDHEHLPRAYSTKFDGSPILKRCSSNANFRYIDPERAQFGSHWLDRWMEESVWNRSRDASLKNGHTDDEKSDKILEVDTWKPHFTSHRSSSSFHASQHYLASDYNNEMAYDSPSKRSTKALNQSLSSLKFQKGKDVASRTAENSPQIFSASSRPGSGARRGPFTPTRSECSWGFFSGYSGHPNYMANTESSRAKVRSQSAPRQRLEFERYGSTGRSVQGLGDALPISDRDADFRSNTYPASSRLNRIGSTNLR 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1243 461 Gene3D - 125 176 - -
Glsi12g1243 461 SMART iq_5 124 146 IPR000048 GO:0005515
Glsi12g1243 461 SMART iq_5 147 168 IPR000048 GO:0005515
Glsi12g1243 461 ProSiteProfiles IQ motif profile. 125 153 IPR000048 GO:0005515
Glsi12g1243 461 MobiDBLite consensus disorder prediction 339 361 - -
Glsi12g1243 461 MobiDBLite consensus disorder prediction 23 46 - -
Glsi12g1243 461 Pfam Protein of unknown function (DUF4005) 352 414 IPR025064 -
Glsi12g1243 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 170 IPR027417 -
Glsi12g1243 461 MobiDBLite consensus disorder prediction 339 372 - -
Glsi12g1243 461 ProSiteProfiles IQ motif profile. 149 176 IPR000048 GO:0005515
Glsi12g1243 461 PANTHER IQ-DOMAIN 5-RELATED 16 428 - -
Glsi12g1243 461 MobiDBLite consensus disorder prediction 1 46 - -
Glsi12g1243 461 Pfam IQ calmodulin-binding motif 128 146 IPR000048 GO:0005515
Glsi12g1243 461 Pfam IQ calmodulin-binding motif 149 166 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1243 Glsi-ChrGlsi12 30109330 30113122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1243 1 427 IQD Protein Family AT5G62070 49.428 5.47e-71 228