Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1240 ATGCCCAGTGGTTCCATAGTTGAGCCACCTCTTCATTTTCCCCCCGTTTCCAGTTCATTGCAAAATCCCTCTGCCTCCTCTTTCTCCACTGTATGCTCCATCTTCTATTTCGTCTCCTTCTCTGAGCATCTTAATTTATCGTTTAATTTCATTATTAATAAGATATTTGATTTGTACATTTTGTTATCCATTATTGTTGTTGCTAATGGTACTTTTCTACAGAAAAAGAAGATGGAGGGCCATGGTGACATGGGTCTAATTGGGGAATTTGATCCTGGTTTGATGGGGAGGATGAGGGATGATGAGTATGAGAGTCGGTCTGGGAGTGATAATCTTGAAGGTGCATCGGGTGATGATCAGGATGCTGGTGATGATCATCCTCAGAGGAGAAAGAAATACCATAGACACACTCCTCACCAAATTCAAGAGCTCGAAACATTTTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGATCGGAACTTAGCAAGAGGCTCGGCTTGGAGGGTAAGCAAGTCAAGTTCTGGTTTCAAAATAGACGAACCCAGATGAAGACCCAACTGGAACGCCATGAGAATATAATTCTTAGACAAGAAAATGACAAGCTCCGAGCCGAGAACAGCGTGATAAAGGAAGCCATGGCAAACCCTATGTGTAACAGATGTGGTGGCCCAGCCATTCCTGGCCAAATTTCATTTGAGGAGCACCAACTTAGAATTGAAAACGCTCGACTAAAGGATGAATTGAACCGAATATGCTCCTTGGCAAACAAGTTCCTGGGCAGACCCCTCTCATCCTTAGCCAGTCCCGTTGCTCTTCCAAGCACAAATTCTGGTCTTGAGCTTGCTATTGGAAGGAGTGGGATTGGTGGATCAAGCACTCTAGGCACTACCTTGCCAATCGGGCTTGACTTGGGAGAAGGGGTCTTGGGCACTCCTCCTGCAATGCCAGGAATTAGATCACCAATGGGAATGATGGGAAGTGAAGTTCAGTTTGAGAGATCTATGCTTATAGATCTTGCATTGTCTGCTATGGAGGAATTAATTAAGAAGGCTCAGGCTGATAGCCCTCTCTGGATTAAGAGTTTGGATGGCAATAAAGAAGTACTGGATCATGAGGAGTATGACCGGATGATTTCTCCTTGTATTGGTCCAAAACCAACGGGATTTGTAACTGAAGCTTCTAGAGAAACTGGGATAGTAATCATAAACAGTTTAGCCCTCATGGAAACACTGATGGATGCGAATCGATGGGCGGAGATGTTTCCATCCTTGATTGCTAGAGCTGCCACCCTTGATGTAATATCAAATGGTATGGGTGGAACAAGAAATGGTGCTTTGCAACTGATGCATGCTGAGGTTCAATTGCTTTCGCCACTTGTCCCTGTGCGTCAATTGAGATTCCTCCGATTCTGCAAGCAGCATGCAGAAGGTGTATGGGCTGTGGTGGATGTTTCAGTTGACATTGGTCATGATGCTATCAGTGCCCACCCATTCATGAGCTGTAGGAGGCTTCCTTCTGGCTGTGTTGTGCAAGATATGCCCAATGGTTACTCCAAGGTAACATGGGTTGAGCATTCTGAGTGTGATGAAAGTGTTGTCCACCAACTCTACCGGCCATTACTTAATACCGGTATTGGCTTTGGTGCTCATAGGTGGATTGCCACCCTCCAAAGGCAATGTGAATGTTTAGCAATCCTCGTGTCCTCTTCTATCCCTAGTGAGGATCATACTGCCTTAAGCCAAGCTGGTAGGAGAAGCATGTTGAAGCTAGCACAACGCATGACCAATAACTTCTGTTCCGGTGTTTGTTCTTCATCTGTGCGCAAATGGGAAAGCCTTCATGTTGGTACATTGGGTGATGAAATGAAAGTGATGACTAGGAAAAACCTGGATGACCCAGGTGAGCCTCCTGGGATTGTGGTGAGTGCTGCAACTTCTGTCTGGATCCCAATGTCACGGGAAAAGCTGTTCAATTTTCTTCGTGATGAACAGTTGAGAAGTGAGTGGGACATTCTTTCCAATGGTGGACCAATGCAGGAGATGGTCCATATTGCTAAAGGACAAGGACCTGGAAATTGTGTTTCTCTCCTTCGTGCTAGCGCTGTTAATGCCAACGAGAGCAACATGGTAATTTTGCAAGAGACATGGACGGATTCGTCATGCTCAGTGGTAGTGTATGCCCCGGTTGACGTGCAATCCTTGAATGTGGTGATGAGTGGTGGAGACTCTGCATATGTTGCTCTCTTGCCTTCAGGCTTTGCCATTCTTCCTGATGGTCAATCCGGCTATGGCAGCGGCTATCTACTTAAGGGCGGCGACGAAGGTGGTGAAAGTGGTGGAAGCTTGCTTACAGTTGGGTTCCAGATTCTGGTGAATAGTCTCCCAACGGCTAAGCTGACAGTGGAGTCAGTTGATACAGTTAACAATCTTATCTCCTGCACCATTCAGAAGATCAAAACTGCCCTCAGAGTTGCATGA 2481 0.4587 MPSGSIVEPPLHFPPVSSSLQNPSASSFSTVCSIFYFVSFSEHLNLSFNFIINKIFDLYILLSIIVVANGTFLQKKKMEGHGDMGLIGEFDPGLMGRMRDDEYESRSGSDNLEGASGDDQDAGDDHPQRRKKYHRHTPHQIQELETFFKECPHPDEKQRSELSKRLGLEGKQVKFWFQNRRTQMKTQLERHENIILRQENDKLRAENSVIKEAMANPMCNRCGGPAIPGQISFEEHQLRIENARLKDELNRICSLANKFLGRPLSSLASPVALPSTNSGLELAIGRSGIGGSSTLGTTLPIGLDLGEGVLGTPPAMPGIRSPMGMMGSEVQFERSMLIDLALSAMEELIKKAQADSPLWIKSLDGNKEVLDHEEYDRMISPCIGPKPTGFVTEASRETGIVIINSLALMETLMDANRWAEMFPSLIARAATLDVISNGMGGTRNGALQLMHAEVQLLSPLVPVRQLRFLRFCKQHAEGVWAVVDVSVDIGHDAISAHPFMSCRRLPSGCVVQDMPNGYSKVTWVEHSECDESVVHQLYRPLLNTGIGFGAHRWIATLQRQCECLAILVSSSIPSEDHTALSQAGRRSMLKLAQRMTNNFCSGVCSSSVRKWESLHVGTLGDEMKVMTRKNLDDPGEPPGIVVSAATSVWIPMSREKLFNFLRDEQLRSEWDILSNGGPMQEMVHIAKGQGPGNCVSLLRASAVNANESNMVILQETWTDSSCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAILPDGQSGYGSGYLLKGGDEGGESGGSLLTVGFQILVNSLPTAKLTVESVDTVNNLISCTIQKIKTALRVA 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1240 826 ProSiteProfiles START domain profile. 330 566 IPR002913 GO:0008289
Glsi12g1240 826 FunFam Homeobox-leucine zipper protein HDG1 116 203 - -
Glsi12g1240 826 SUPERFAMILY Bet v1-like 590 820 - -
Glsi12g1240 826 SMART HOX_1 129 191 IPR001356 GO:0003677
Glsi12g1240 826 CDD homeodomain 130 187 IPR001356 GO:0003677
Glsi12g1240 826 Gene3D - 117 201 - -
Glsi12g1240 826 MobiDBLite consensus disorder prediction 97 137 - -
Glsi12g1240 826 Pfam Homeodomain 130 185 IPR001356 GO:0003677
Glsi12g1240 826 Pfam START domain 340 563 IPR002913 GO:0008289
Glsi12g1240 826 CDD START_ArGLABRA2_like 334 562 - -
Glsi12g1240 826 ProSiteProfiles 'Homeobox' domain profile. 127 187 IPR001356 GO:0003677
Glsi12g1240 826 FunFam Homeobox-leucine zipper protein GLABRA 2 339 562 - -
Glsi12g1240 826 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 128 823 IPR042160 -
Glsi12g1240 826 SUPERFAMILY Homeodomain-like 116 187 IPR009057 -
Glsi12g1240 826 SMART START_1 339 563 IPR002913 GO:0008289
Glsi12g1240 826 SUPERFAMILY Bet v1-like 332 563 - -
Glsi12g1240 826 Coils Coil 181 216 - -
Glsi12g1240 826 ProSitePatterns 'Homeobox' domain signature. 162 185 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1240 Glsi-ChrGlsi12 30086215 30090788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1240 78 823 Homeobox Transcription Factor Family AT3G61150 58.280 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi12g1240 START 2.2e-49 CL0209