Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1236 ATGGCTACGTCCTTCAACCTTTCAGTTTCCTACCTTTCCCTGTTTCAGCTCTTTTGTTTGCTCGCTACAGCCGTTATTCACCAGAATGAAGAAATCCCCGAAAAAGACTTGCTTCTTTCCTTCAAAACCAGTCTCCAAAATCCCCAGCTTCTTTCTTTGTGGAATCCATCAACCCCGCACTGCAACTGGGTTGGTGTCACTTGCCAACTCGGCCGAGTCACCTCACTGTCTCTTCCATCTTGCTCCCTCAAAGGCCCTCTCGCTTCTTCCCTATTCTCCCTCTCGGGCCTCACAGTCCTCAACTTGTCCTCCAACGCTCTCTTCGGTGAAGTTCCTCCACAGATAGCCAATCTGCGAAACTTGAAGCAGCTGAATCTCGGTGGCAATCAGTTTTCTGGGGAAATCCCGGGTGAGCTTGGTGAGTTAATTCGGTTAGAAACTCTAAAACTCGGTTCCAGCTCCTTCACTGGAAAAATCCCACCGGAGCTGTGGTCGCTGACACGACTGCAGACGCTCGACCTCTCCGGCAATGCTCTCACCGGAGCCTTATCGGATAATATCGGAAACTTGACCCAGCTCCAGTTCCTCGACCTCAGTAACAATCTCCTTTCAGGTTCTCTACCTTTAACTCTCTTCACGGGAACACTTTCCCTGATTTCACTGGACATTTCAAACAATTCAATTTCCGGTTCACTGCCTCCGGAAATCGGTAACTGGAAGAATATCACTGCTCTTTATATTGGCAACAACAAATTATGCGGTAGACTGCCTTCTGAAATTGGCAAGCTTTCCCGGCTTGAAATCTTCTATTCACCTACCTGTTTTATAGAAGGTCCATTGCCTGCAGATATGTCGAAACTAAAGTCATTGACTAAACTTGACCTCTCTTATAACCCCTTGAAGTGTTCGATCCCAAACTCTATAGGGAAATTGCAAAATTTGAGAATACTGAACCTTGTTTTCGCGCAGCTCAATGGGTCGATACCATCTGAGCTGGGAAATTGTAGGAGCTTGAGGTCTGTGATGCTTTCTTTCAATTCGCTTTCTGGGACATTGCCAGAGGAGCTTTCTGAACTCCCCATAATAACCTTTTCGGCTGAAAAAAATCAGTTCCATGGGCAGTTACCTGCTTGGATTGGAAAGTGGAATCGTATCGAGTCTCTTTTGCTTTCCACCAATCGGTTTTCTGGGGTAATCCCTCCCGAGCTTGGGAATTGTTCTTTGATGGAGCACCTTAGTTTGAGTAGCAACTTGCTGACAGGTCCCGTACCTGAGGAGCTCTGTAATGCCGCTTCACTTTTGGAGATTGATCTTGATGATAACTTCCTTTCTGGTACAATTGAGAACACGTTTATCAAGTGTAAGAACCTTACCCAGTTAGTTCTGATGAACAATCATATTGCTGGTTCTATACCACAGTATCTTTCAGAGCTTCCATTGATGGTGCTTGATTTAGACTCGAACAATTTTAGTGGGGACATACCTTCAAATCTGTGGAACTCATCAACTCTAATGGAATTTTCTGCTGCTAATAATGGTTTGGATGGCTCTCTTCCGGTGGAGATTGGGAATGCTGTTATTCTAGAGAGGCTTGTTCTTAGTAACAATCGGCTCACAGGTACTATACCTAAGGAAATTGGAAGCCTCACAAGTCTATCTGTTCTTAATTTGAACTCAAATCTGCTTGAAGGGAATATTCCAACTGAGCTTGGAGACTGCATTTCACTGACCACATTGGACCTTGGAAATAATAAACTCAATGGCTCTATTCCAGAGAAACTGGCGGAACTAAGCCAATTACAGTGCCTGGTTCTTTCTCATAATGATCTATCTGGGTTCATTCCCGCAAAGCCATCTTCATATTTTCGACAACTTACCATCCCTGATTTAAGCTTCGTTCAACACCTTGGAGTATTTGATCTGTCCCACAATAGATTGTCTGGCACCATACCTGATGAACTGGGGAGCTGTGTAGTGGTTGTGGATCTTTTAATCAGTAACAACTTGCTCTCTGGGAGTATTCCAAGATCACTCTCACGCTTGAAAAATCTCACAACTTTGGATTTGTCTGGTAATTTGTTATCAGGTTCCATTCCACCAGAACTTGGAAATTCCCTTAAGCTGCAAGGACTGTATCTGGGAAAGAATCAGCTCACGGGCGCCATACCTGGAAGTTTTGGAAGTTTGAGTAGTTTGGTGAAGCTAAATTTGACTGGAAATAAGTTGTCTGGTCCAATTCCAACAAGTTTGGGGAATATAAAAGAGCTGACTCACTTGGATTTGAGCCGTAATGAGCTCTACGGCGAGCTTCCCTCCTCTCTGTCAGGTGTACAAAGTCTTGTTGGGCTTTATGTGCAGCAGAACAGGCTTTCTGGCCAAGTAGGCGACCTCTTCTCAAACTCCATGATATGGAGGATTGAGACAATGAATTTAAGTGATAATTGCTTCAATGGGGACTTGCCACAATCTTTGGGAAATCTGTCTTTCTTGACGAATTTGGATCTCCATAGAAATATGTTTACGGGAGAGATTCCTTCAGACGTTGGGAATCTAATGCAACTTGAGTATTTGGATGTTTCGGGTAACAGGCTATCTGGAAAAATTCCAGAGAAGATATGCAGCCTGGTTAATCTGAATTACCTAGATTTGTCGCAAAACAGATTGGAAGGGGCTATACCCAGAATTGGTATTTGCCAGAACTTATCGAGAGTTAGATTTGCGGAGAATAAAAATCTTTGTGGGCGAATTTTGGGAATAGATTGTCGAATCAATGCCATCGACAGATCTGCTTTACTTAAAGCATGGCGACTCGCTGGACTTGCCATAACAATCACTCTAATTACTCTAAGCATTGCTTTTGTTCTACGCAGATGGATTTACAGGAGGCAAAATGATCCTGAGGAACTTGAGGAACGCAAACTAAGCAGTTATGTGGATCAAAATCTTTACTTTTTGAGCAGTAGCAGATCAAAGGAGCCTTTGAGTATCAATGTAGCAATGTTTGAGCAGCCTCTTCTGAAGTTAACTTTGGCTGATATCCTTGAAGCTACTGACAACTTCAGCAAGACAAATATAATTGGAGATGGAGGTTTTGGAACTGTGTACAAGGCCACTTTACCCAATGGAAAAACAGTTGCTGTGAAGAAGCTGAGTGAAGCTAAAACCCAGGGTCATCGTGAGTTCATGGCTGAAATGGAAACCTTGGGCAAGGTGAAGCATCAAAATCTTGTTCCATTGCTTGGATATTGCTCCATAGGTGAGGAAAAACTCCTTGTTTACGAATACATGGTAAATGGGAGCTTAGACCTTTGGTTGAGGAATAGGACGGGGGCCCTTGAAGTCCTTGACTGGGACAAACGCTACAAAATTGCAACTGGTGCAGCTCGAGGATTAGCTTTCCTTCATCATGGGTTCATCCCTCACATCATTCACAGGGACGTTAAAGCTAGCAACATTTTACTTAATGAGGATTTTGAGCCGAAAGTTGCTGACTTTGGACTGGCCAGACTGATTAGTGCCTGCGAGACTCATATCACCACTGATATTGCTGGAACATTTGGTTACATCCCACCAGAGTATGGACAGAGTGGGAGATCCACAACAAGAGGGGATGTCTATAGTTTTGGTGTGATTTTGCTTGAACTGGTGACGGGAAAAGAGCCAACTGGACCTGACTTCAAAGAGATTGAAGGTGGGAATTTGGTTGGATGGGTCTTTCAGAAAATCAAGAAGGAACAGGCTGCAGATGTTCTTGATCCAATAGTACTCGACGCAGATTCAAAGCAGATGATGCTTCAAATGCTGCAGATTGCTTGTGTATGCCTCTCTGACAATCCCGCAAACAGGCCTACCATGCTTCAAGTACTTAAGTTTCTGAAGGGGATCAAGGGAGAGTAA 3897 0.4385 MATSFNLSVSYLSLFQLFCLLATAVIHQNEEIPEKDLLLSFKTSLQNPQLLSLWNPSTPHCNWVGVTCQLGRVTSLSLPSCSLKGPLASSLFSLSGLTVLNLSSNALFGEVPPQIANLRNLKQLNLGGNQFSGEIPGELGELIRLETLKLGSSSFTGKIPPELWSLTRLQTLDLSGNALTGALSDNIGNLTQLQFLDLSNNLLSGSLPLTLFTGTLSLISLDISNNSISGSLPPEIGNWKNITALYIGNNKLCGRLPSEIGKLSRLEIFYSPTCFIEGPLPADMSKLKSLTKLDLSYNPLKCSIPNSIGKLQNLRILNLVFAQLNGSIPSELGNCRSLRSVMLSFNSLSGTLPEELSELPIITFSAEKNQFHGQLPAWIGKWNRIESLLLSTNRFSGVIPPELGNCSLMEHLSLSSNLLTGPVPEELCNAASLLEIDLDDNFLSGTIENTFIKCKNLTQLVLMNNHIAGSIPQYLSELPLMVLDLDSNNFSGDIPSNLWNSSTLMEFSAANNGLDGSLPVEIGNAVILERLVLSNNRLTGTIPKEIGSLTSLSVLNLNSNLLEGNIPTELGDCISLTTLDLGNNKLNGSIPEKLAELSQLQCLVLSHNDLSGFIPAKPSSYFRQLTIPDLSFVQHLGVFDLSHNRLSGTIPDELGSCVVVVDLLISNNLLSGSIPRSLSRLKNLTTLDLSGNLLSGSIPPELGNSLKLQGLYLGKNQLTGAIPGSFGSLSSLVKLNLTGNKLSGPIPTSLGNIKELTHLDLSRNELYGELPSSLSGVQSLVGLYVQQNRLSGQVGDLFSNSMIWRIETMNLSDNCFNGDLPQSLGNLSFLTNLDLHRNMFTGEIPSDVGNLMQLEYLDVSGNRLSGKIPEKICSLVNLNYLDLSQNRLEGAIPRIGICQNLSRVRFAENKNLCGRILGIDCRINAIDRSALLKAWRLAGLAITITLITLSIAFVLRRWIYRRQNDPEELEERKLSSYVDQNLYFLSSSRSKEPLSINVAMFEQPLLKLTLADILEATDNFSKTNIIGDGGFGTVYKATLPNGKTVAVKKLSEAKTQGHREFMAEMETLGKVKHQNLVPLLGYCSIGEEKLLVYEYMVNGSLDLWLRNRTGALEVLDWDKRYKIATGAARGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHITTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVFQKIKKEQAADVLDPIVLDADSKQMMLQMLQIACVCLSDNPANRPTMLQVLKFLKGIKGE 1298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1236 1298 Pfam Protein tyrosine and serine/threonine kinase 1023 1292 IPR001245 GO:0004672|GO:0006468
Glsi12g1236 1298 SUPERFAMILY L domain-like 366 615 - -
Glsi12g1236 1298 SMART LRR_typ_2 729 752 IPR003591 -
Glsi12g1236 1298 SMART LRR_typ_2 311 335 IPR003591 -
Glsi12g1236 1298 SMART LRR_typ_2 190 214 IPR003591 -
Glsi12g1236 1298 SMART LRR_typ_2 94 117 IPR003591 -
Glsi12g1236 1298 SMART LRR_typ_2 287 310 IPR003591 -
Glsi12g1236 1298 SMART LRR_typ_2 118 142 IPR003591 -
Glsi12g1236 1298 SMART LRR_typ_2 827 851 IPR003591 -
Glsi12g1236 1298 SMART LRR_typ_2 166 189 IPR003591 -
Glsi12g1236 1298 SMART LRR_typ_2 753 777 IPR003591 -
Glsi12g1236 1298 SMART LRR_typ_2 681 705 IPR003591 -
Glsi12g1236 1298 SMART LRR_typ_2 633 657 IPR003591 -
Glsi12g1236 1298 SMART LRR_typ_2 875 900 IPR003591 -
Glsi12g1236 1298 SMART LRR_typ_2 549 573 IPR003591 -
Glsi12g1236 1298 Gene3D Phosphorylase Kinase; domain 1 982 1095 - -
Glsi12g1236 1298 Pfam Leucine rich repeat N-terminal domain 34 68 IPR013210 -
Glsi12g1236 1298 ProSiteProfiles Leucine-rich repeat profile. 683 705 IPR001611 GO:0005515
Glsi12g1236 1298 ProSitePatterns Protein kinases ATP-binding region signature. 1026 1049 IPR017441 GO:0005524
Glsi12g1236 1298 Pfam Leucine Rich Repeat 853 875 IPR001611 GO:0005515
Glsi12g1236 1298 Pfam Leucine Rich Repeat 683 703 IPR001611 GO:0005515
Glsi12g1236 1298 Pfam Leucine Rich Repeat 289 311 IPR001611 GO:0005515
Glsi12g1236 1298 Gene3D Ribonuclease Inhibitor 33 140 IPR032675 -
Glsi12g1236 1298 FunFam serine/threonine-protein kinase BRI1-like 2 1096 1298 - -
Glsi12g1236 1298 SUPERFAMILY L domain-like 46 361 - -
Glsi12g1236 1298 Gene3D Ribonuclease Inhibitor 623 924 IPR032675 -
Glsi12g1236 1298 Gene3D Ribonuclease Inhibitor 216 362 IPR032675 -
Glsi12g1236 1298 Gene3D Ribonuclease Inhibitor 363 622 IPR032675 -
Glsi12g1236 1298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1142 1154 IPR008271 GO:0004672|GO:0006468
Glsi12g1236 1298 SUPERFAMILY L domain-like 622 914 - -
Glsi12g1236 1298 SMART serkin_6 1020 1292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1236 1298 ProSiteProfiles Leucine-rich repeat profile. 289 311 IPR001611 GO:0005515
Glsi12g1236 1298 Pfam Leucine rich repeat 707 766 IPR001611 GO:0005515
Glsi12g1236 1298 Pfam Leucine rich repeat 528 586 IPR001611 GO:0005515
Glsi12g1236 1298 Pfam Leucine rich repeat 144 203 IPR001611 GO:0005515
Glsi12g1236 1298 Gene3D Ribonuclease Inhibitor 141 215 IPR032675 -
Glsi12g1236 1298 FunFam leucine-rich repeat receptor protein kinase EMS1 213 362 - -
Glsi12g1236 1298 ProSiteProfiles Protein kinase domain profile. 1020 1298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1236 1298 PRINTS Leucine-rich repeat signature 169 182 - -
Glsi12g1236 1298 PRINTS Leucine-rich repeat signature 190 203 - -
Glsi12g1236 1298 SMART LRR_sd22_2 851 877 - -
Glsi12g1236 1298 SMART LRR_sd22_2 681 713 - -
Glsi12g1236 1298 SMART LRR_sd22_2 573 599 - -
Glsi12g1236 1298 SMART LRR_sd22_2 94 120 - -
Glsi12g1236 1298 SMART LRR_sd22_2 287 308 - -
Glsi12g1236 1298 SMART LRR_sd22_2 753 779 - -
Glsi12g1236 1298 SMART LRR_sd22_2 166 189 - -
Glsi12g1236 1298 SMART LRR_sd22_2 190 211 - -
Glsi12g1236 1298 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 629 925 - -
Glsi12g1236 1298 FunFam Leucine-rich repeat receptor protein kinase EMS1 363 622 - -
Glsi12g1236 1298 PANTHER OS04G0122200 PROTEIN 672 1279 - -
Glsi12g1236 1298 FunFam Leucine-rich repeat receptor-like protein kinase 32 185 - -
Glsi12g1236 1298 FunFam serine/threonine-protein kinase BRI1-like 2 981 1095 - -
Glsi12g1236 1298 Gene3D Transferase(Phosphotransferase) domain 1 1096 1298 - -
Glsi12g1236 1298 SUPERFAMILY RNI-like 311 428 - -
Glsi12g1236 1298 SUPERFAMILY Protein kinase-like (PK-like) 1001 1292 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1236 Glsi-ChrGlsi12 30056501 30060397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1236 34 1295 Receptor kinase-like Gene Family AT5G07280 53.943 0.0 1237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Glsi12g1236 PK_Tyr_Ser-Thr 1.7e-46 CL0016