Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1235 ATGGCTCCGCCGCCCGTGGATCACAACGGCGAGTCCACGGCTGGTGAGTCTCAGAGATCTATTCCGACGCCTTTTCTAACGAAAACTTATCAGCTCGTCGACGATCATACTATAGACGATGTCATATCCTGGAACGAAGATGGATCCACTTTCATCGTTTGGAACCCTACGGTTTTCGCCAGGGATTTGCTGCCTAAATACTTCAAGCACAACAATTTTTCTAGCTTTGTCCGTCAACTCAACACCTATGGATTCAGAAAAGTAGTGCCTGATCGGTGGGAATTCTCGAACGAGTATTTTCGCAGGGGCGAGAAACGGCTTCTGTGCGAAATTCAGCGTCGAAAAATTTCATCACCTTCGCCGCCAGTGGCCGGGCCAACTGCGACAGTGGCACTTCCGACGCCGTTCCCGTTGACTGCCATACCAATGGGGAAGCCGATCATATCGCCCTCAAACTCGGGGGAAGAACAGGTTATTTCATCAAATTCATCGCCGACGAGAGCTCCCGCTGAGCTCTTGAACGAAAATGAAAGGCTGAGAAAAGAGAACGTTCAGCTGAGCAAGGAAATAGCGGAGATGAGATCTCTATGTAACAATATATTTAATCTGATGTCAAATTATGCAAATAATCAGATGGATAGCGGTGTGCAAGGTAAAGAGAGCGGTTACACGGCCGTGAAACCGCTCGATTTTCTGCCGGTGAAGCGGAGCTCCTGTGAGGAGACACCGGCGGTGGTGGAGGTGGAGGAAATTAATCCGAAGCTGTTTGGGGTGGCGATCGGTGCGAAGCGAACGAGGGAGGGACGTAGAAGAGGAGCAGAAGCAGAGGACGACACAGTGTTAAGCTTACATCGGTCGGGGCCCGCGGAAATGAGATCAGAGCCGTTGGGTTGTCAAAACCGTAGCGATAATCAGGAAACGCCGTGGCTGAATCAGTGCCACAGTGCAAATCAGAGAGGCATCTACCAGATTGAAGACCTTTCTGGGCTGCGAGCATCAATTTCCAACCATCTGTCACGGGATAACCGATACATTTTCTACAGGGTAGGCATTAGGGGACTTTGGTTATGTGCAAACAACTTAAGATCTTATATTGGAGAGGATGCATGGGATGATGATCGAGATACTCCTGAGGAAAATGTAAAACAAATGATTGAGAATGATGAAAGATTAAATAAAGAAGAAAAGAAAGAACTGACAAAAGGCTTGGGCATTTCAGTGCACCAAGTCTCTGGATTTGTTCCAAAGCAAACACGTGGGCTCTGTAGTTGTAACTTTCGGCCTTCTGAAGACCGAACTATTCCCTTGAGTGATTGTAAATACATGTTTTCATTTCCCTGTGCATTTCCCGAACATCTACCATCCATGGTTGCAGGTATCCGGACAGATGATAGTAACCTGCAGCTTGAGGCAACAACTCAGTTTCGGAAGTTGCTTTCAATTGAATGGAAATGCAGCCCACCAATTAAAGAGGTTATACAAGCTGGTGTAGTTCCTCACTTTGTTGAATTTCTGATGAGGGAAGACTTTCCACAACTGCAGTTTGAGGCAGCTTGGGCTTTGACTAATATAGCTTCTGGAACATCTGAAAACACCAAGGTGGTAATTGATCATGGGGCTGTCCCAATTTTTGTCAAACTCCTTGGATCTCCAAGTGATGATGTGCGTGAACAGGTTTAG 1680 0.4702 MAPPPVDHNGESTAGESQRSIPTPFLTKTYQLVDDHTIDDVISWNEDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEYFRRGEKRLLCEIQRRKISSPSPPVAGPTATVALPTPFPLTAIPMGKPIISPSNSGEEQVISSNSSPTRAPAELLNENERLRKENVQLSKEIAEMRSLCNNIFNLMSNYANNQMDSGVQGKESGYTAVKPLDFLPVKRSSCEETPAVVEVEEINPKLFGVAIGAKRTREGRRRGAEAEDDTVLSLHRSGPAEMRSEPLGCQNRSDNQETPWLNQCHSANQRGIYQIEDLSGLRASISNHLSRDNRYIFYRVGIRGLWLCANNLRSYIGEDAWDDDRDTPEENVKQMIENDERLNKEEKKELTKGLGISVHQVSGFVPKQTRGLCSCNFRPSEDRTIPLSDCKYMFSFPCAFPEHLPSMVAGIRTDDSNLQLEATTQFRKLLSIEWKCSPPIKEVIQAGVVPHFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQV 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1235 559 MobiDBLite consensus disorder prediction 1 20 - -
Glsi12g1235 559 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi12g1235 559 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 496 539 IPR000225 GO:0005515
Glsi12g1235 559 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi12g1235 559 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi12g1235 559 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi12g1235 559 Coils Coil 378 398 - -
Glsi12g1235 559 SMART arm_5 528 559 IPR000225 GO:0005515
Glsi12g1235 559 SMART arm_5 485 526 IPR000225 GO:0005515
Glsi12g1235 559 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 300 IPR027725 -
Glsi12g1235 559 FunFam Heat stress transcription factor B-4 17 115 - -
Glsi12g1235 559 Coils Coil 176 196 - -
Glsi12g1235 559 Gene3D - 17 115 IPR036388 -
Glsi12g1235 559 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi12g1235 559 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Glsi12g1235 559 Pfam Armadillo/beta-catenin-like repeat 528 558 IPR000225 GO:0005515
Glsi12g1235 559 Pfam Armadillo/beta-catenin-like repeat 486 526 IPR000225 GO:0005515
Glsi12g1235 559 SUPERFAMILY ARM repeat 438 558 IPR016024 -
Glsi12g1235 559 Gene3D - 451 559 IPR011989 -
Glsi12g1235 559 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1235 Glsi-ChrGlsi12 30045426 30055047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1235 1 319 HSF AT5G62020 48.810 3.20e-91 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi12g1235 HSF_DNA-bind 3.1e-32 CL0123