Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1230 ATGATCGGCTACACACTGTTACACGTCGCTCTCGTCCTCCTAGTATCGTCGGCGCACCATGGCTTTAACGTTAGTGCTCAGTCAGCTTCACAACCAGTAGCTCCTCATGCTTTACGCGACAACCTAAACCCATCAGTTGCTGTGGTGATTATGGCCCTCGTTTGCACCTTCTTGTTCGTGGGCATCTTTTCAATCTACGTCCACCATTGCTCCGAGACATACCTCACCATGGGAAACCCAGTTAGCGCCACCGTCGATTGCTCCTGTGCTCCTCGGGGTATCGACCCAAAATTGCTTGACACCTTCCCCATCCTTGTCTACTCCACTATTAAAGACCTCAAAATTGGGAAAGGAGCGCTCGAGTGTGCAGTGTGCTTGAGCGAGTTCAAAGACTACGAGACGCTCCGGTTGTTGCCGAAATGCAACCACGTCTTCCACCCAGAATGCATCGACGCCTGGTTAGCTTCCCACCTGACTTGTCCCGTTTGTCGTGCGAAGCTAAAGCCAGACTCCGGTGATCAAATAGCCATAGCAATTCCGAGTGAGACAAATGCCCAAGAAGTAGTTGATTATAGTTCTGGGAGAAGAGCTGAGCTTGGTGCTGCAGAGGAACAACCGGGAGCGCCTAACATGAACGAAGGTCAGAGTCAGAGGAGCGAGAATGTTAATGGGTCAATTTGGAAGCAAACTCGTCAACAACAGTCGAGAGCTCGTGGGAAGCTTGTGAGGTCCCATTCAACAGGTCACTCTTTGGTTGAACCGGAGAAGAACGTGGAGAGATACACTCTGAGGTTGCCGGAGGATGTGAGGAAGCATATTGTAGTGATTCATGGAGGAATTCGGCGTTCGGCGAGCTACGATGTCATTTTTCCAGGGCAAGGGAGTTCGAGGAAAGGGTGTAGAAATGATGGGGAAGGAAGCAGTAGAGGAAATAAGAGAGAGAGCAGTGAGCGGCAGACGAGGCGGTTGGTGCTCTCAATGACCCCTCCATTTGTTTCAAGGTTTTGGGCTTCTTCGTCGTGTCCTCTTCACCCTCTATAA 1041 0.5082 MIGYTLLHVALVLLVSSAHHGFNVSAQSASQPVAPHALRDNLNPSVAVVIMALVCTFLFVGIFSIYVHHCSETYLTMGNPVSATVDCSCAPRGIDPKLLDTFPILVYSTIKDLKIGKGALECAVCLSEFKDYETLRLLPKCNHVFHPECIDAWLASHLTCPVCRAKLKPDSGDQIAIAIPSETNAQEVVDYSSGRRAELGAAEEQPGAPNMNEGQSQRSENVNGSIWKQTRQQQSRARGKLVRSHSTGHSLVEPEKNVERYTLRLPEDVRKHIVVIHGGIRRSASYDVIFPGQGSSRKGCRNDGEGSSRGNKRESSERQTRRLVLSMTPPFVSRFWASSSCPLHPL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1230 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 172 IPR013083 -
Glsi12g1230 346 MobiDBLite consensus disorder prediction 291 320 - -
Glsi12g1230 346 MobiDBLite consensus disorder prediction 302 320 - -
Glsi12g1230 346 CDD RING-H2_EL5-like 121 164 - -
Glsi12g1230 346 SUPERFAMILY RING/U-box 121 170 - -
Glsi12g1230 346 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 268 - -
Glsi12g1230 346 MobiDBLite consensus disorder prediction 209 241 - -
Glsi12g1230 346 SMART ring_2 122 163 IPR001841 -
Glsi12g1230 346 FunFam E3 ubiquitin-protein ligase ATL6 82 170 - -
Glsi12g1230 346 Pfam Ring finger domain 121 164 IPR001841 -
Glsi12g1230 346 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Glsi12g1230 346 MobiDBLite consensus disorder prediction 198 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1230 Glsi-ChrGlsi12 30014682 30015722 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1230 6 334 Rapid Response to Elicitors AT3G05200 36.522 3.17e-59 194