Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1229 ATGATTCTCGGTGTTTACTTGCCGCCACAAAGTTGCTACTTGAATGAGAAGACTTGTTATTCTGGAACAGGTGGCATTTCTAGAGTCTTCCGAGTGGATCGAGCTCTCATTATATTTGGATTTATTTGGGAAAATTGCTTCATTTACTTCGTCTTCCCCAAAAACCAGAGCCTTAATCAAGGGGAAAATTGCTTCATTCACTTCGCCTCCCCCAAAAACCAGAGCCTTAATCAAACCAGTGCTCATTTTCTGTCTACCTCCTTCTTCCATCCCATTCCTCTCCATTCCAACAAGTCACCAACCATTTCTAAAGCTTTGTCTTTCATAATCACTTCCCCTCCGTCGTTTGAAACCCCCATTACACAGCTCAGCTCAATTTTGCAACCTTTGAACCAGATGATCCAATCCAAACAATTCCAGTTCAGCCTACTCACATGGGCTCAACTACTCGCTCTCTTCGTACCGTCGGTGAGCCTTGGCGCTGCTGCACAATCAGCTGTACAACCAGTGCCTTCCTTTGCTTCCCACCAAAACTGGGACCCTTCAATTGCTGCCATAGTTGGAGCCCTCTTTTGCGCGTTCCTATTCATGGGCTTCTTTTCCATCTACCTTCGCCGTTGCTCCGAATCATACCTCACCGTCCAGAATCACATCGGTACCTCCGAAGAGTGGCCCTGTTCCTGTTCTCAGGGCGTCGATCGGAAAGTCATTGACACCTTTCCGATCCTCGTCTATTCGACCATCAAAGACCTCAAAATTGGCAAACAATCACTTGAATGTGCAGTGTGCTTGAACGAGTTCAAAGACTATGAGACCCTACGGTTACTGCCAAAATGCAACCACGTCTTCCACCCGACTTGTATCGACACCTGGTTATCTTCCCAGGTGACCTGTCCCGTATGTCGAGATAAGCTGAACCCAGATTGTGGTGAAGTAGTCATTGAAGTGCCGACTCAGTCGAACGCTAATGAGTTGGATGAGGGAAGTCCAATTAGCAGAGATGAACAGGAGGAAACAGAAGACCAACATCCGGGGGTGCCTGACGCGAATGAAGTTCAGAGAAGCGGGAACTCTGGGGAAACTGATATTGTGACCGTCGATGAAGCTACAGGGAAGCAAAGCCCTCCATTGAATTCGACAAGGTTTGGGGAGCTTACGAGGTCCAACTCGACAGGTCATTCTCAGGTTGAACATGAGAAGAACGTGGAGAGGTATACTCTGAGGTTGCCGGAGGATGTTCGGAATTATATTCTGCGGAAACATGGATCGATTCGGCGTTCAGCAAGTTGCAATATGATCATGCCTATGGTAGGGAGTTCAAGGAAAGGGTTTTGTTGTAGTAACAATGTTGAGCAGCAAGAGCGGTGGGTGCTCTCAAGGGCCCCGCCATTTGTTTCTCGCCAGTGTTGA 1410 0.4773 MILGVYLPPQSCYLNEKTCYSGTGGISRVFRVDRALIIFGFIWENCFIYFVFPKNQSLNQGENCFIHFASPKNQSLNQTSAHFLSTSFFHPIPLHSNKSPTISKALSFIITSPPSFETPITQLSSILQPLNQMIQSKQFQFSLLTWAQLLALFVPSVSLGAAAQSAVQPVPSFASHQNWDPSIAAIVGALFCAFLFMGFFSIYLRRCSESYLTVQNHIGTSEEWPCSCSQGVDRKVIDTFPILVYSTIKDLKIGKQSLECAVCLNEFKDYETLRLLPKCNHVFHPTCIDTWLSSQVTCPVCRDKLNPDCGEVVIEVPTQSNANELDEGSPISRDEQEETEDQHPGVPDANEVQRSGNSGETDIVTVDEATGKQSPPLNSTRFGELTRSNSTGHSQVEHEKNVERYTLRLPEDVRNYILRKHGSIRRSASCNMIMPMVGSSRKGFCCSNNVEQQERWVLSRAPPFVSRQC 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1229 469 MobiDBLite consensus disorder prediction 351 392 - -
Glsi12g1229 469 Pfam Ring finger domain 259 302 IPR001841 -
Glsi12g1229 469 CDD RING-H2_EL5-like 259 302 - -
Glsi12g1229 469 MobiDBLite consensus disorder prediction 317 401 - -
Glsi12g1229 469 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 172 371 - -
Glsi12g1229 469 ProSiteProfiles Zinc finger RING-type profile. 260 302 IPR001841 -
Glsi12g1229 469 MobiDBLite consensus disorder prediction 328 347 - -
Glsi12g1229 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 309 IPR013083 -
Glsi12g1229 469 SUPERFAMILY RING/U-box 259 308 - -
Glsi12g1229 469 SMART ring_2 260 301 IPR001841 -
Glsi12g1229 469 FunFam E3 ubiquitin-protein ligase ATL6 222 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1229 Glsi-ChrGlsi12 30011059 30013494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1229 161 467 Rapid Response to Elicitors AT3G05200 36.977 1.58e-55 188