Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1226 ATGATGTGCAAAAATAGTTCCTCGGTGTCTTTAACTGCCCGAAAAGGATTAAATTTTGATACTGAAATTACATTGTCTTGCAGTTCGTCGGGCACGCACGCGCGCGTATTTCCGGTGGATAACAATAGGTGCCGCGGACGCAGAGAGTTTAACCCATCTTGGTTAATCCAAATTCACCCTAGAAAACTGACATTATTGGAGAGTGAAGAGGTTGGTTTGCTCGTGGGTGCAACTTTTGATGTCTGGAAGAGAACTGATCAAGTTACATTGTGGAAGTTTCAAGCATCAAGTGTTTCCAGTAGTACAAAGAAATTTTGTGTAAGCTTGGATAAGACAACTGAAGGATCAAAGAAGGAATTACTTATGGAGGAATGCTTTCTTCAGTATCGTTCAGACATGGTTGATGAAGCAAGAGATCAAATTGAAGATGATCCAGAAGAAGAACTTAATAGTGAAGCAGAAGACAGAGAACAGGAATCAAGTGAGGAACTTGAAGAGGATCCCGTTGAAGAAGCGGAGCAGAAGCAGCTAGAAGCAGAAGATGACCCAGAAGAAGAACTTAATAGTGAAGCAGAAGACAAAGAAGAGGAATCAAGTAAGGAACCAGAAGAAGATCCCATTGAAGAAGTGGAGCAGAAGCAGCTAGAAGAAACAATTCTTGACCCAGGATTGCAGACGAAACTTGGGGAAGTACCATGTTATGGAGTTCCTGAATGCTCTCAGTTGTCATTTTATAATTACAAAGATGACCGAGAACCATTCAAGGAAGTAGCAGAAGCATCTTTGTTGAAGCAGACCTCTGAGTGTGAGGAGCCAGAAGGAGATCCTGAAGACGATCTAGTTGAAGAAGTGAAACAAAAGCAGCTAAAAGAAACAATTCTGGACCCAGAACTTGATAAGAAACTGGGGGAAGCATCACGTAATGAGGTTCCAGTATGCTCTCAGGAGTCATTTTATAACTGCAATGCTGATCAGACTCAAGAATTATTTGAGGAGCTATCAGAAGTGTCTTCTTCAAAGCAAACTTCTGACCATGATTCTGACAAATGTGATCACAAATCAGGATCTGTTAAATCAAATGATAAGAAGAGGTGTCCGGATGCTGCATCTGGTGTATCAACTCCATTGATATATTATCAGTCACAAAAGAAATGCAAGCAAGGGAGATCTTCAGGTCCAAAATTAGAATCAGGACCTTCAGGTCTGGAGCTCAATAATGACTTTGTGACTGTTGTGGCACCTAATGATAAATCTGCTTCCAAAGAAGATGGCACAGGAAGTTCGGGAAAACGAAAGCACAGCAGATGGGAACCAGAGTCTGAGGGTGATGGGATAAAAGATAATCAGACTTGCAAAAGGAGGAAAACCAGGTGGTCCAGTGATGATACTCAGATAAAAATGCTGGGACCACTTCAGCTGCCTGACTTCACAAATAAGTTGCTTACTGGATCTGAGAAGGATCCAGAAATTCAGGGGCTGAAAGCTGAGCTTTTTGAGATTAATAGAAAATTGCAAAGACCTCTTCATGATGATAGGCCTGAGGAGGAAAGATCTCCTTCACCAGAACCAATTTATGATAGCATTGGCGTCAGAATAAATACACGGGAAGTAAGACTCTATCAGAAACTTGTCCAGAAACGTCAAAATATCATATCTAAGTTGATTAAATCAAACCCAACTTTTAACCCTCCTCCTGATTACAAGCCTCCAAAGCTCTTCAAAAAACTCTACGTACCAGTGAAAGAATATCCAGAGTACAATTTTGTTGGCCTTATAATTGGTCCTCGTGGAAACACACAGAAGAGAATGGAAAATGAAACTGGGGCTAAGATTCTTTTAAGAGGTAAAGGCTCCTCTAAAACACCCAACAAACCTGCCTCTGATAAAGAAGACTTACACGTCTATATAGAAGCAGATGATCAAAAATCACTGGATGCAGCAGTTGCCATGGTTGAGAGACTGCTAATCCCAATTGAAGAAGGAAGAAATAAGCACAAGCAGGCCCAATTAAAGGAGCTGGCCATGCTGAATGGAACAGTTAGAGATGAAAATGCATGCAGTGTGTGCGGAGATGAGGGTCACCCACATTATGCCTGCCCTAACTTTCAATCTACTTTCAACATGAACTCGTGTGACACATATTGTAGCAACAGTCATTTACAATCTGCATGTCCCTTGGCTGCACTATCTCCGCATAATGATTCTGTGCAGGGTTCTGGGTTTGGTTTTAGTCTCAGTTCAACACAGAATAGACAAAAGAGGCCTGAAAAGAAATCAGCGATAAATAATCTTTATGTTGGCAATCTGCCTCAAGCAATTGATGATGATAGATTGACTGAACTGTTTTCTCCATTTGGTAAGATCACTGAAGCAAAAGTTGTCAAGGATCGAACCACTGGAATTAGTAGAGGTTATGGCTTTGTCAAGTTTGGGAATGCCATGGATGCGGCAGTAGCTGCAACTCATTTTAATGGTTTCAAAATGGATGGGAGGTTTTTGAAAGTGAGGATGGCTGGGCTCCTGTTAGATACTGAATCCCCAGGCCTGAACCATCTTCCACATCGCCCAGGGCCTGCAGGTATATCCCAAAATGTCACAAATCAAACCGATTGGTCTGGCCCGTTACATTTCATGCTGCCAGAACATAAAACTTCATTTCATGACATCAGTGGCATGAAGATGTTTTCATCCACCATCGACTCATTGCACGATGATCCTAAGAAGGATCTAGGTTTTACTCCTCCAGGCAACACCTCAACCCCCTCTGATTTTAGTAATTCTAGTGTTGTGCATTTTTCATACAACTTTTCAGATCGAGGTTTGTTCTCATCAGGCAAATCAATCATACAGAATCCTGGTGATCCAGGCAATCCCGGTTCCCAGTTTCAGTCATATTTTATGACACCAGCAGTTAAAACAGCTAAACTGCCGACTCCTGATCACAGATCAGAGGAAGATTATGATTTCTATCCCTCCTTCATTGCACAAAATGGACTTCAGGGCACTTAA 3009 0.4171 MMCKNSSSVSLTARKGLNFDTEITLSCSSSGTHARVFPVDNNRCRGRREFNPSWLIQIHPRKLTLLESEEVGLLVGATFDVWKRTDQVTLWKFQASSVSSSTKKFCVSLDKTTEGSKKELLMEECFLQYRSDMVDEARDQIEDDPEEELNSEAEDREQESSEELEEDPVEEAEQKQLEAEDDPEEELNSEAEDKEEESSKEPEEDPIEEVEQKQLEETILDPGLQTKLGEVPCYGVPECSQLSFYNYKDDREPFKEVAEASLLKQTSECEEPEGDPEDDLVEEVKQKQLKETILDPELDKKLGEASRNEVPVCSQESFYNCNADQTQELFEELSEVSSSKQTSDHDSDKCDHKSGSVKSNDKKRCPDAASGVSTPLIYYQSQKKCKQGRSSGPKLESGPSGLELNNDFVTVVAPNDKSASKEDGTGSSGKRKHSRWEPESEGDGIKDNQTCKRRKTRWSSDDTQIKMLGPLQLPDFTNKLLTGSEKDPEIQGLKAELFEINRKLQRPLHDDRPEEERSPSPEPIYDSIGVRINTREVRLYQKLVQKRQNIISKLIKSNPTFNPPPDYKPPKLFKKLYVPVKEYPEYNFVGLIIGPRGNTQKRMENETGAKILLRGKGSSKTPNKPASDKEDLHVYIEADDQKSLDAAVAMVERLLIPIEEGRNKHKQAQLKELAMLNGTVRDENACSVCGDEGHPHYACPNFQSTFNMNSCDTYCSNSHLQSACPLAALSPHNDSVQGSGFGFSLSSTQNRQKRPEKKSAINNLYVGNLPQAIDDDRLTELFSPFGKITEAKVVKDRTTGISRGYGFVKFGNAMDAAVAATHFNGFKMDGRFLKVRMAGLLLDTESPGLNHLPHRPGPAGISQNVTNQTDWSGPLHFMLPEHKTSFHDISGMKMFSSTIDSLHDDPKKDLGFTPPGNTSTPSDFSNSSVVHFSYNFSDRGLFSSGKSIIQNPGDPGNPGSQFQSYFMTPAVKTAKLPTPDHRSEEDYDFYPSFIAQNGLQGT 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1226 1002 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 572 687 IPR036612 GO:0003723
Glsi12g1226 1002 MobiDBLite consensus disorder prediction 138 211 - -
Glsi12g1226 1002 ProSiteProfiles Type-1 KH domain profile. 587 651 - -
Glsi12g1226 1002 Pfam KH domain 587 652 IPR004088 GO:0003723
Glsi12g1226 1002 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 762 840 IPR000504 GO:0003723
Glsi12g1226 1002 MobiDBLite consensus disorder prediction 504 526 - -
Glsi12g1226 1002 SMART rrm1_1 763 836 IPR000504 GO:0003723
Glsi12g1226 1002 MobiDBLite consensus disorder prediction 504 521 - -
Glsi12g1226 1002 SMART kh_6 572 656 IPR004087 GO:0003676
Glsi12g1226 1002 MobiDBLite consensus disorder prediction 338 365 - -
Glsi12g1226 1002 MobiDBLite consensus disorder prediction 423 460 - -
Glsi12g1226 1002 MobiDBLite consensus disorder prediction 330 460 - -
Glsi12g1226 1002 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 764 834 IPR000504 GO:0003723
Glsi12g1226 1002 SUPERFAMILY RNA-binding domain, RBD 744 838 IPR035979 GO:0003676
Glsi12g1226 1002 MobiDBLite consensus disorder prediction 137 231 - -
Glsi12g1226 1002 CDD KH-I_BBP 571 656 - -
Glsi12g1226 1002 PANTHER RNA-BINDING PROTEIN RELATED 424 864 IPR045071 -
Glsi12g1226 1002 MobiDBLite consensus disorder prediction 374 388 - -
Glsi12g1226 1002 Coils Coil 146 166 - -
Glsi12g1226 1002 Pfam Splicing factor 1 helix-hairpin domain 454 568 IPR032570 -
Glsi12g1226 1002 Gene3D - 484 564 IPR047086 -
Glsi12g1226 1002 Gene3D - 733 839 IPR012677 -
Glsi12g1226 1002 Gene3D K Homology domain, type 1 570 685 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1226 Glsi-ChrGlsi12 29989370 29995558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1226 753 838 Eukaryotic Initiation Factors Gene Family AT1G49760 44.186 1.04e-11 67.0