LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g1222	ATGGGGTGCCAGGCACCAAATAAGGCAAAACCAAAACACAGGAGGGGCTTATGGTCACCTGATGAAGACAACAAGCTCAGAAGCCACATCTTCAATCATGGCCATGCCTGCTGGAGCTCTGTCCCCATTAAGGCAGGGTTGCAGAGGAATGGAAAGAGCTGCAGACTAAGGTGGATCAACTACCTAAGGCCAGGATTAAAGAGAGGAATGTTCACCAAACAAGAGGAAGACACAATTCTTACCCTTCACCACATGCTGGGAAACAAGTGGTCACAGATAGCACAGCATTTACCAGGAAGAACTGATAATGAGATAAAAAACTACTGGCATTCCTTTTTGAAGAAGAAAGTGGCCAAATCTGAGGAAATGGAATCTCAGAAACAAATTCAACATACTAGCTCAAGCTCAGATACAATGGATTCTTCACCCTCTTCCCAGAACCCTACAAGTGGAGTTGCAAATTATGCTTTGTTGGAAAACATGGAAAAATCATTACCAAATACTGATCTCTCCTCAGTCACCACAGAGGCTTATCAGAGCTCCTTACCTAAACTGTTATTTGCTGAATGGCTTTCGCTAGATCATATAAATGCTGGGAACTCTTCAAATTCAAGTGACTCTCTGATCTTGAGGAATGGACTTGATCAGAGTTCAAGTTTCGAAGAAGATGTAATGCATGGTATATCAGAAATACACTATGATGGTGACTTTCACAACAGTCTAACCCACAGTTCAGCCTCTGAGATGCTCGATTCTCAACTCAAGTTTTCAAATCAAATGCTGGGAAATGGGTTCATCCATTGTGTCCCTGGAACTAATATAAGTAGCAGTTTCAGCATGAGCAACGATGTAATGTACATATGA	864	0.4213	MGCQAPNKAKPKHRRGLWSPDEDNKLRSHIFNHGHACWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGMFTKQEEDTILTLHHMLGNKWSQIAQHLPGRTDNEIKNYWHSFLKKKVAKSEEMESQKQIQHTSSSSDTMDSSPSSQNPTSGVANYALLENMEKSLPNTDLSSVTTEAYQSSLPKLLFAEWLSLDHINAGNSSNSSDSLILRNGLDQSSSFEEDVMHGISEIHYDGDFHNSLTHSSASEMLDSQLKFSNQMLGNGFIHCVPGTNISSSFSMSNDVMYI	287

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g1222	287	FunFam	MYB transcription factor	12	68	-	-
	Glsi12g1222	287	ProSiteProfiles	Myb-like domain profile.	10	62	IPR001005	-
	Glsi12g1222	287	CDD	SANT	71	113	IPR001005	-
	Glsi12g1222	287	CDD	SANT	18	62	IPR001005	-
	Glsi12g1222	287	FunFam	MYB transcription factor	70	141	-	-
	Glsi12g1222	287	MobiDBLite	consensus disorder prediction	127	151	-	-
	Glsi12g1222	287	SUPERFAMILY	Homeodomain-like	12	109	IPR009057	-
	Glsi12g1222	287	MobiDBLite	consensus disorder prediction	119	151	-	-
	Glsi12g1222	287	MobiDBLite	consensus disorder prediction	1	21	-	-
	Glsi12g1222	287	Gene3D	-	7	67	-	-
	Glsi12g1222	287	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	10	62	IPR017930	-
	Glsi12g1222	287	SMART	sant	14	64	IPR001005	-
	Glsi12g1222	287	SMART	sant	67	115	IPR001005	-
	Glsi12g1222	287	ProSiteProfiles	Myb-like domain profile.	63	113	IPR001005	-
	Glsi12g1222	287	Pfam	Myb-like DNA-binding domain	68	111	IPR001005	-
	Glsi12g1222	287	Pfam	Myb-like DNA-binding domain	15	62	IPR001005	-
	Glsi12g1222	287	PANTHER	MYB DOMAIN PROTEIN 55	7	246	-	-
	Glsi12g1222	287	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	63	117	IPR017930	-
	Glsi12g1222	287	Gene3D	-	69	142	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g1222	Glsi-ChrGlsi12	29970335	29972255	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g1222	8	225	MYB Transcription Factor Family	AT5G52260	49.321	1.39e-63	199

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Glsi12g1222		Myb_DNA-binding	2.1e-10	CL0123