LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g1221	ATGATGTTATTTGTTGACAACTTGAATAAATTCAGATGTTCGAGCTTAAGGGTTTATGGTTATAGAAATAAGAACCAAGCACATGATTTTATCCCAATTGGGGAAGAGTTTCTGGAACTCTTGGACTCTTGTCTCAGTTATGCAAATTATGCGGTGGCTGTCAGATCAAACCCCAGAATTGTGGATGCTATTGATGATATTTCAAAAATTCAGTTCCGCGTAGGCTCTGATGTGTATTATGCTTTTTATGTTGCCATTAAGAACCCCAGAGCATTGCCTTCCGGGGCATGTTATAATAAAAAGAGGGAGAAAAGGTATATTATATTAGTAAATGACTGTGGTGATGAGGTGGTGAAGATGGGGAAGGCACCCTGTTGTGATAAAGATGGAGTGAGAAAGGGAGCTTGGACTCCTGAAGAAGACGAAGCCTTAGTTCAGTACATCAAGAAGCATGGCCATGGTAGTTGGCGTACACTCCCCAAGCAAGCAGGCCTCCTTCGATGTGGAAAAAGTTGTCGGCTTCGGTGGATAAACTATCTTCGCCCAGACATCAAGCGCGGCCCTTTCACTACTGAAGAAGAAAGTACCATTATTCAACTTCATGGAATGCTTGGCAACAGGTGGGCTGCCATAGCATCCCAGCTACCAGGAAGAACAGACAATGAAATTAAGAACCACTGGAACACCCATCTAAAGAAGCGCCTCCTTCGCTCAGGTCATGCCTTAAGGCCACATAATTCGTCGTTCAGTCCCCATCAAAGTAATGTCAAGTCTGAATCTCCTTCTACACGTCACATGGTACAGTGGGAAAGTGCCAGGGTTGAGGCAGAGGCAAGGTTGTCAATGGAATCTTCACTGCTGAATTCATGGTCAACAAATAAAACAACCCCTGATTACTTTCTTCAACTTTGGCATTCCAATGTTGGACAATCTTTTCGAATGATCAAAGGAAAGGAAATGGACTGTCAAAGCCCTGTCTCACAGACATCTACTTCCTCTAAATTGGCGTCATCATCAGATGTCTCATTGCAGGTGAAGAACACTGAAACCAGTGGCTGTGCCGACATCACTAAAGAACAAGAAAGTAGCTGCAAACGAAAGCCTCAAGACATAACATCTGGGTCAGGCTCAATCTCAGGCTCTTACGATTTCCTTTATAATTCTGATTCTGCATTGAAGCTTCTTCTAGATATGCCTGATGGGGATATAGAATTCTTAGAAGGGCAGACAGACAGTTTCTTGAGTCCACTTGATGGTCGGTGTGAGTGA	1269	0.4342	MMLFVDNLNKFRCSSLRVYGYRNKNQAHDFIPIGEEFLELLDSCLSYANYAVAVRSNPRIVDAIDDISKIQFRVGSDVYYAFYVAIKNPRALPSGACYNKKREKRYIILVNDCGDEVVKMGKAPCCDKDGVRKGAWTPEEDEALVQYIKKHGHGSWRTLPKQAGLLRCGKSCRLRWINYLRPDIKRGPFTTEEESTIIQLHGMLGNRWAAIASQLPGRTDNEIKNHWNTHLKKRLLRSGHALRPHNSSFSPHQSNVKSESPSTRHMVQWESARVEAEARLSMESSLLNSWSTNKTTPDYFLQLWHSNVGQSFRMIKGKEMDCQSPVSQTSTSSKLASSSDVSLQVKNTETSGCADITKEQESSCKRKPQDITSGSGSISGSYDFLYNSDSALKLLLDMPDGDIEFLEGQTDSFLSPLDGRCE	422

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g1221	422	ProSiteProfiles	Myb-like domain profile.	128	180	IPR001005	-
	Glsi12g1221	422	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	128	180	IPR017930	-
	Glsi12g1221	422	MobiDBLite	consensus disorder prediction	243	265	-	-
	Glsi12g1221	422	FunFam	MYB transcription factor	187	246	-	-
	Glsi12g1221	422	Gene3D	-	133	185	-	-
	Glsi12g1221	422	Gene3D	-	188	235	-	-
	Glsi12g1221	422	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	181	235	IPR017930	-
	Glsi12g1221	422	CDD	SANT	188	231	IPR001005	-
	Glsi12g1221	422	CDD	SANT	135	180	IPR001005	-
	Glsi12g1221	422	SUPERFAMILY	Homeodomain-like	131	227	IPR009057	-
	Glsi12g1221	422	Pfam	Myb-like DNA-binding domain	186	231	IPR001005	-
	Glsi12g1221	422	Pfam	Myb-like DNA-binding domain	133	180	IPR001005	-
	Glsi12g1221	422	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	120	359	-	-
	Glsi12g1221	422	FunFam	Myb transcription factor	130	186	-	-
	Glsi12g1221	422	ProSiteProfiles	Myb-like domain profile.	181	231	IPR001005	-
	Glsi12g1221	422	MobiDBLite	consensus disorder prediction	319	341	-	-
	Glsi12g1221	422	MobiDBLite	consensus disorder prediction	322	341	-	-
	Glsi12g1221	422	SMART	sant	132	182	IPR001005	-
	Glsi12g1221	422	SMART	sant	185	233	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g1221	Glsi-ChrGlsi12	29966077	29970042	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g1221	120	413	MYB Transcription Factor Family	AT3G61250	55.116	4.61e-100	298

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Glsi12g1221		Myb_DNA-binding	1.7e-15	CL0123