Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1202 ATGGCCTCCATATCCCAGTCCCACTACCCCAGAAGTTGTGAATTAATGCTGCTAGTGTTGGGATTGGTGTTAATTATGAGGAATACAAAGGCAATGCCTGATTCAGCCGAAGAAAAGCGCAAATGTATTGGGCAGCTCACTGGGATCACATCGTGTCTGCCTTATGTTGGGGGCGACGCCAAAACACCCACTACAGATTGCAGTGATGGTCTCAAACAAGCCATGCAGTACAATAAGAAGTGCGTCTGTATTGTCATTAAAGATCGCAACGATGCTGACCTCGGCTTGAAGCTTAATGCAACTCTTGCTCTTGGTCTCCCTTCTCTCACCAAAACCCCTGACAATTTCTCCCAGTGTCCTTACAGAAACAAGAGAAGAAATCGAATTGCAGATGGGACTGCCATTAGGAAGTATGAACGCAAGAGACAGACTAGAACAAGAAAGTCTCAGAAGGTCCCACCACGCAGTCCCATCATGGGGCCTCTGGAGTTGGCAATAAGATTTGGCTTCACTTCAGATCTGCATTATTCTCCCACCATTCAATCATGGCAGGCCCAGTTACCCCACCTAAACTTGGTGGCCCCCGCCCAGTTTAGAGTCTTCTGCTTATTGCAAGTCTTCCACGTTTACCCAAAGCAGCAAAACTATCAAGAAGAATCAGAGGGAACTTTTGCATTCCAACCAGAAAGTTTTCTGGTTGAAGGCACTGAAGTGGGCAAAAGATGGTGGATTGGACCAAGGGCAAATCCTGATCTATCTTCCTCAGTCAAAGAAAGATTAGTGCTTGCCGTTGGGTGCTTAAAAGAATACACCAAAAATACGAATAGTTATGTGTGCTGTGTGTCCACTGTGGATTCTGCTTGTTATGTGGCGGATGTAGACATATTAGGCTTCCAGGAAGTGTGCTCTGAGTGCCACCTTTTTGGAGGGCAAGGCATTGTTGGGACAGCTTTCACAACAACCAAACCATATTTTGCGACTGACATAACTGCCTTTAGCAAAACTGAATACCCTCTGGTTCACCATGCTGGCATGTTTGGGTTGCATGCTACTGTGGCTATTCCCCTCCGAAGTGTCTATACCGGATCATCTGATTTCGTCTTGGAATTTTTCTTACCAAAAGATTTCCATGATAGCGAAGAACAAAAGCAGATGCTGAAATCATTATCTGTGGTGGTACAGCAAACTTGCCGAAGTTTACATGTGGCCATTGAGGAAGAATTCACGTTTACAGTTCGAGAAATGTTGGCTCCTTCAGAAGAACCATCTTCAAAAGAATCGTCTTGGATTGCGCATATGATGAAGGCCCAACAGAAGGGGAAAGGTGTCTCGGTCTCCTTGGAATACCTGGAAGAACCGAAACAAGAGTTCGAAGTGACAACCAACTGGGATAGCACTCACGCAGGATTATGCAATGGAGATTTTGGACAACTTCAGCACAGCTCTGCATCCAGAGGCAGTGTAGAGGGTGGAGGAGAATCTTACACTTTTGATTCAGCAGAAGAGAAGCAGAAATGTGCAGAGCAATTGACAGGGATTGCCACGTGTCTGCCATATGTGGGCGGTGATGCGAGAGCACCCACACCAGACTGCTGTACTGGTCTGAAAGAAGCCATGAAGAACAATAAGAAGTGCGTCTGTCTTATCGTAAAGGACAGGGACGACCCTGACCTGGGCTTGAAGATCAACCTTACACTCGCTCTTGGTTTGCCTGCTATTTGCAAAGCCCCCGACAATTTCTCCCAGTGTCCCGGTTCGTTTAACTCCAACAATATTGCCAGCTCTACCAGTCCTGCTCCCAGTCCTGGTGATGAAGAGAATTCGCCGAGTGGGAAAGAAGATGCAGGGGCCACAGGAACAAGTATTCCAGCAAAGAGCGACGCTTGTTATAAGGGAAAAGGATTGTTTGGTTCTTTAGCTGCAGGGCTTCTAATTTGGATTTCGATGTGA 1950 0.4651 MASISQSHYPRSCELMLLVLGLVLIMRNTKAMPDSAEEKRKCIGQLTGITSCLPYVGGDAKTPTTDCSDGLKQAMQYNKKCVCIVIKDRNDADLGLKLNATLALGLPSLTKTPDNFSQCPYRNKRRNRIADGTAIRKYERKRQTRTRKSQKVPPRSPIMGPLELAIRFGFTSDLHYSPTIQSWQAQLPHLNLVAPAQFRVFCLLQVFHVYPKQQNYQEESEGTFAFQPESFLVEGTEVGKRWWIGPRANPDLSSSVKERLVLAVGCLKEYTKNTNSYVCCVSTVDSACYVADVDILGFQEVCSECHLFGGQGIVGTAFTTTKPYFATDITAFSKTEYPLVHHAGMFGLHATVAIPLRSVYTGSSDFVLEFFLPKDFHDSEEQKQMLKSLSVVVQQTCRSLHVAIEEEFTFTVREMLAPSEEPSSKESSWIAHMMKAQQKGKGVSVSLEYLEEPKQEFEVTTNWDSTHAGLCNGDFGQLQHSSASRGSVEGGGESYTFDSAEEKQKCAEQLTGIATCLPYVGGDARAPTPDCCTGLKEAMKNNKKCVCLIVKDRDDPDLGLKINLTLALGLPAICKAPDNFSQCPGSFNSNNIASSTSPAPSPGDEENSPSGKEDAGATGTSIPAKSDACYKGKGLFGSLAAGLLIWISM 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1202 649 Pfam Probable lipid transfer 500 583 IPR016140 -
Glsi12g1202 649 Pfam Probable lipid transfer 23 119 IPR016140 -
Glsi12g1202 649 CDD AAI_LTSS 513 575 - -
Glsi12g1202 649 PANTHER PROTEIN NLP8 276 461 IPR045012 GO:0003700
Glsi12g1202 649 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 505 584 IPR036312 -
Glsi12g1202 649 CDD AAI_LTSS 49 108 - -
Glsi12g1202 649 Gene3D - 39 116 IPR036312 -
Glsi12g1202 649 Gene3D - 503 582 IPR036312 -
Glsi12g1202 649 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 41 120 IPR036312 -
Glsi12g1202 649 MobiDBLite consensus disorder prediction 591 621 - -
Glsi12g1202 649 SMART aai_6 42 119 IPR016140 -
Glsi12g1202 649 SMART aai_6 506 583 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1202 Glsi-ChrGlsi12 29789423 29799785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1202 280 536 NLP Transcription Factor Family AT4G35270 41.472 2.31e-55 201