Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1189 ATGCGGAGTCCCACACTTACCGGGTTGCTGAATCGGGTCTTCGGCGAATTCCCCTCTCGCCGTGCCGTCTCCGTTTCCGGAAAGATCGATCTCACTTACTCTCGCCTTCACCGGCTCATCGAACACGCTGCTTCTCGCTTACTTTCTGCGGGAATAAACGCCGGCGATGTTGTTGCTCTCACCTTCCCCAACAGCGTCGAGTTTGTTATAATGTTCCTGGCCGTCATTCGAGCGCGAGCCACCGCTGCGCCGTTGAACCCAGCCTACACTGCGGAAGAGTTTGAATTCTATTTATCTGACTCAGAATCGAAGCTCTTATTGACGTCGCAAGAAGGAAACAAGCCGGCTCAAGCAGCGGCTTCTAAGCTGAACATTCCTCACGCCACGGCTTCGCTTACCAATGAAGATGACGCCGAGCTAAGCCTCTCGCTTAGCCAATCCGCGTCAGACGTCAACTTGGTCACCGAACTCGTCAATGACCCTTCCGATGTAGCACTGTTCCTTCACACTTCTGGCACCACCAGCAGGCCCAAGGGGGTGCCCCTAACTCAGCTCAACTTGGCCTCTTCGGTGCAGAACATAAAGTCCGTGTACAAACTCACTGAGTCCGACTCGACCGTGATTGTTCTTCCATTGTTCCACGTCCACGGAATCATCGCCGGGTTAATGAGTTCACTCGGAGCCGGGGCCGCGGTGGCACTCCCAGCGGCGGGTCGTTTCTCGGCTTCCACATTTTGGTCAGATATGGTCAAGTATAACGCCACGTGGTACACGGCAGTTCCTACCATACACCAGATCATATTGGATCGCCACCTCAATAAACAAGAACCCGTTTATCCTAAACTCCGGTTTATTCGGAGCTGTAGCGCCTCACTCGCACCGTCCATATTGGGTCGGATGGAGGAGGCATTCGGAGCACCGGTTTTGGAGGCGTATGCGATGACGGAAGCAACCCATCTTATGTGTTCGAACCCGTTGCCAGAGGATGGGCCACATAAGCCCGGGTCGGTGGGAAAACCCGTGGGTCAAGAAATGGCAATATTGGGCGAGAAGGGGGAAGTACAAAAGGCTGAAGGGAGAGGAGAGGTTTGTGTTAGAGGATCAAATGTGACGAAAGGTTACAAAAATAACCCAGAAGCTAATAAGGCAGCGTTTCAGTTTGGTTGGTTTCACACGGGTGATATTGGATTCTTTGATTCGGATGGGTATTTGCATCTCGTGGGTCGGATCAAGGAGCTAATTAATCGTGGAGGAGAGAAAATATCACCAAGTGAAGTGGATGCTGTCCTTTTATCTCATTCAGACCTTGCTCAAGCAGTTGCTTTCGGAGTGCCGGATGTTAAATATGGCGAAGAGATAAATTGTGCAATCATCCCAAGAGAAGGATCAAACATTGATGAAGCAGAGGTCCTAAGATTTTGCAAGAAGAATCTCGCAGCGTTCAAAGTCCCCAAAAAGGTTTTCATTGCTGATTCTTTACCGAAGACCGCCACTGGCAAGATTCTAAGACGTCTTGTAGCGGAGCACTACCTTTCTCAAATTTGA 1545 0.5087 MRSPTLTGLLNRVFGEFPSRRAVSVSGKIDLTYSRLHRLIEHAASRLLSAGINAGDVVALTFPNSVEFVIMFLAVIRARATAAPLNPAYTAEEFEFYLSDSESKLLLTSQEGNKPAQAAASKLNIPHATASLTNEDDAELSLSLSQSASDVNLVTELVNDPSDVALFLHTSGTTSRPKGVPLTQLNLASSVQNIKSVYKLTESDSTVIVLPLFHVHGIIAGLMSSLGAGAAVALPAAGRFSASTFWSDMVKYNATWYTAVPTIHQIILDRHLNKQEPVYPKLRFIRSCSASLAPSILGRMEEAFGAPVLEAYAMTEATHLMCSNPLPEDGPHKPGSVGKPVGQEMAILGEKGEVQKAEGRGEVCVRGSNVTKGYKNNPEANKAAFQFGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPSEVDAVLLSHSDLAQAVAFGVPDVKYGEEINCAIIPREGSNIDEAEVLRFCKKNLAAFKVPKKVFIADSLPKTATGKILRRLVAEHYLSQI 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1189 514 CDD FACL_fum10p_like 18 508 IPR045310 GO:0016874
Glsi12g1189 514 PANTHER ACYL-COA SYNTHETASE 5 513 - -
Glsi12g1189 514 Gene3D - 6 409 IPR042099 -
Glsi12g1189 514 FunFam Peroxisomal-coenzyme A synthetase 5 409 - -
Glsi12g1189 514 ProSitePatterns Putative AMP-binding domain signature. 167 178 IPR020845 -
Glsi12g1189 514 SUPERFAMILY Acetyl-CoA synthetase-like 5 512 - -
Glsi12g1189 514 Gene3D - 410 512 IPR045851 -
Glsi12g1189 514 Pfam AMP-binding enzyme 16 416 IPR000873 -
Glsi12g1189 514 Pfam AMP-binding enzyme C-terminal domain 425 500 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1189 Glsi-ChrGlsi12 29667737 29670405 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1189 5 514 Monolignol Biosynthesis Gene Families AT4G05160 30.755 9.50e-60 204