Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1179 ATGACCGATTCGGCGGAAGAAAATCCCGACCCTCCTCCCAAGTCAAAGCTAGCGGAGGAACCTGGGTACGTCATGGATTTCGACCTCGACCCGGAAAGTTCCTGGCCCTTGGATCATATGTCATTCGTCTCCAACCCCATGTCGCCTTTTCTTATCTCCTCCTCCTCTGAACAACCTTTTTCTCCTCTCTGGGCTTTTTCGGACGTAGACGATGATAGGCACGCCAGAATTGCCGCTGCAGCCTTCTCCGATGGCCATAAATTGTTCTCTTGCAATTCAAATTCAGTAAATGCAAAGCCAATAGAAAATGATGAAAACAAGAAACTTTTGCCACGCCTTCTGGCTCTGCCACTATTTGAAAATCCAGATGGTTACTGTCTAATCAAGGAAAGGATGACACAAGCACTTCGCAACTTCAAAGAGTTGACTGAACAGACTGTTCTCGCTCAGGTTTGGGCACCTGTCAGGAATGGGAATCGATATGTGCTTACAACTTCAGGGCAACCATTTGTTCTAGATCCACATAGCAATGGACTCTATCAGTATAGAACTGTCTCTCTGACATACGCGTTTTCTGTGGATGGGGAGAGTGATGGAATCCTGGGACTTCCAGGTCGTGTTTTTCAGCACAAGTTACCAGAATGGACTCCCAATGTTCAGTATTATTCTAGTAGAGAATACTCGCGCCGAAATCACGCTGAACATTATAATGTTCGTGGAACCTTAGCTTTGCCTGTGTTTGAACCTTCAGCACAGTCATGTATTGGTGTACTGGAGTTGATAATGACTTCAGAAAAGGTTAACTATGCTCCTGACGTTGATAAAGTCTGCAAAGCTCTTGAGGCAGTAAATTTGAGGAGCTCAGAAGTTTTGAACCATCCGTACAGTCAGATTTGTAATGAAGGTCGCCAGAATGCCTTAGCTGAGATTTTGGAAATATTGACAGTGGTGTGTGAAACTCATAAATTACCCCTGGCCCAAACATGGGTTCCTTGTAGGCATCGAAGTGTTGTGGCCCGTGGTGGTGGGCTAAAGAAGAGTTGCTCTAGCTTTGATGGTAGTTGCATGGGGCAAGTTTGCATGTCTACAACTGATGCAGCATTATATGTCATAGATGCTCATATGTGGGGTTTCCGTGAAGCCTGTGTTGAGCATCACTTACAACAAGGACAAGGGGTTGCTGGAAGGGCTTTTTTGTCCCGCAACATGTGCTTCTGTGCAAATATTACCCAATTCTGTAAAACTGATTACCCGTTAGTACATTATGCTCTTATGTTTGGGTTAGCCAGCTGTTTTGCAATCTGTTTACGAAGCTCTCATACTGAGGATGATGATTATGTATTAGAGTTTTTTCTGCCTTCTGAAGTCACAGACTTTTATGAACAAAAGACATTGTTGGGATCCATATTGGCAACAATGAATCAGCATTTCCAGAGTCTAACAATTTCTGCTGATGTTGAACTTAAGGAGGAAGGTTCAGTTGAAATCATTGAAGCAACAAATGAAAGAGTTTATTCGAGGCTTGAATCTATACCGGTTACCCAATCTTCTAAATCACCACCCGGGCTTGATGCCTCACCAAATATGGAGGAGGTGGTGCCACTGCCCCTAGATTCATCAGAACAGCAGATAATGATGTACTTAGATGACACAAATGGTGGAGGGAATCTAGGTGATAATGCAGGTAGAGGAGGCATTGATAAGATCTCTTCCTTAGAGAGTAAAAACATAAGGAAGCCCTCAGAGAGAAAACGTGGAAAAACAGAGAAATCAATTAGTCTTGAAGTTTTGCAACGTTATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCGACTACAATGAAGCGCATATGTAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAATAAAGTTAACCGTTCCCTGTCCAAGCTCAAGCATGTTATTGAATCTGTCCAAGGCGCTGAAGGAGCATTTGGTTTGAATTCTCTCAGCCCAAGTCCACTTCCCGTTCCTGTAGTTTCTCTTCCTGAGCCTTCTACTTCAAACAAGTTCAGCCAACAAGCCTCATTAAGCTTTAGGCCATCAAAATCTCCGATGAAAGAGGATGAATTGGATGCCGCTAAAGCATCAGAAACAAACAGACAAGTTGGGATGGAAGAGCAGTTACTTAGAGGAATGATACAAAGTCCCGAGAAAGTAATTCATGACAGAGTTGGGTGCACTCAGGAGCTTGTTAAAGCCCCAAATGGGTCTAGAACTGGGAGTGGATCAGGTGAAGATAGTGCAAATCCTACTTCTCATGGTTCATGCGATGGTAGTCCCCCAAATGCAAGCTCCCCCGCAAAAGATATATTTATCACATCCAACAATGAGCAATGTGTTGTGGTGGGGGGATCACCAAAGTTAACTCTGCAGCCAACTAATAAACTGAACTGTCCAGCTGCATACCGCACACATGATCTTGTGGCGACAGAACCTCGACAGCCACTCGGAGGAATGCTAACTGAGGATGCTGGCAGTTCCCAAGATTTAAAAAATCTGTGTCCGTCGGCAGCAGATGCCATTTTGGAGGATCGGGTTCCAGAAGCTTGTGGGACTAATCCTATATATTCTGATATGGGCCCCAAGAAGTGCATGGATACTCTTTGTAACACCCTGACACCTTTTGCTGCTTGGAGAGAAATGAAGAGTGTGACTATAAAGGCAACGTACAGAGAAGATATCATAAGGTTTCGGATCTCGTTAACGTGTGCTATTGTGGAGTTGAAAGAAGAAGTAGCTAAAAGATTGAAATTAGAGGTTGGTACATTTGATATCAAGTACCTGGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACTTGCAGGAGTGCATGGATATTTCAATATCATCCGGCAGCAACATAATCAGGGTTTTGGTCCATGACATAGCACCCAATCTTGGAAGCTCCTCTGAGAGCTCAGGGGAGTGA 2985 0.4419 MTDSAEENPDPPPKSKLAEEPGYVMDFDLDPESSWPLDHMSFVSNPMSPFLISSSSEQPFSPLWAFSDVDDDRHARIAAAAFSDGHKLFSCNSNSVNAKPIENDENKKLLPRLLALPLFENPDGYCLIKERMTQALRNFKELTEQTVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLYQYRTVSLTYAFSVDGESDGILGLPGRVFQHKLPEWTPNVQYYSSREYSRRNHAEHYNVRGTLALPVFEPSAQSCIGVLELIMTSEKVNYAPDVDKVCKALEAVNLRSSEVLNHPYSQICNEGRQNALAEILEILTVVCETHKLPLAQTWVPCRHRSVVARGGGLKKSCSSFDGSCMGQVCMSTTDAALYVIDAHMWGFREACVEHHLQQGQGVAGRAFLSRNMCFCANITQFCKTDYPLVHYALMFGLASCFAICLRSSHTEDDDYVLEFFLPSEVTDFYEQKTLLGSILATMNQHFQSLTISADVELKEEGSVEIIEATNERVYSRLESIPVTQSSKSPPGLDASPNMEEVVPLPLDSSEQQIMMYLDDTNGGGNLGDNAGRGGIDKISSLESKNIRKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKHVIESVQGAEGAFGLNSLSPSPLPVPVVSLPEPSTSNKFSQQASLSFRPSKSPMKEDELDAAKASETNRQVGMEEQLLRGMIQSPEKVIHDRVGCTQELVKAPNGSRTGSGSGEDSANPTSHGSCDGSPPNASSPAKDIFITSNNEQCVVVGGSPKLTLQPTNKLNCPAAYRTHDLVATEPRQPLGGMLTEDAGSSQDLKNLCPSAADAILEDRVPEACGTNPIYSDMGPKKCMDTLCNTLTPFAAWREMKSVTIKATYREDIIRFRISLTCAIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDISISSGSNIIRVLVHDIAPNLGSSSESSGE 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1179 994 MobiDBLite consensus disorder prediction 679 696 - -
Glsi12g1179 994 CDD PB1_NLP 900 980 IPR034891 -
Glsi12g1179 994 MobiDBLite consensus disorder prediction 748 785 - -
Glsi12g1179 994 MobiDBLite consensus disorder prediction 1 21 - -
Glsi12g1179 994 ProSiteProfiles PB1 domain profile. 899 981 IPR000270 GO:0005515
Glsi12g1179 994 SUPERFAMILY CAD & PB1 domains 896 984 - -
Glsi12g1179 994 PANTHER PROTEIN NLP8 55 993 IPR045012 GO:0003700
Glsi12g1179 994 Pfam PB1 domain 900 980 IPR000270 GO:0005515
Glsi12g1179 994 Pfam RWP-RK domain 591 639 IPR003035 -
Glsi12g1179 994 Gene3D - 896 984 - -
Glsi12g1179 994 MobiDBLite consensus disorder prediction 679 717 - -
Glsi12g1179 994 SMART PB1_new 899 981 IPR000270 GO:0005515
Glsi12g1179 994 ProSiteProfiles RWP-RK domain profile. 578 659 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1179 Glsi-ChrGlsi12 29589037 29593323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1179 880 994 NLP Transcription Factor Family AT1G64530 55.172 9.52e-29 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Glsi12g1179 PB1 8.3e-18 CL0072