Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1171 ATGGGAAGCATTGAAGGAGATGAAGGAGAGCGACCGGAGGATATGGATGAGACTGTATATGTTGCGGTGGGGAAGAATATAGAGAAGAGCCAACAGCTGCTGCTTTGGGTAGTCCGCAACTGTGCTGATAAGAAGATATGCGTGCTTCATGTTCACCGGTCTGAGGCTGTAAATTCCTCGACGGACAGGAGACTGACGGGGAGCGAAGCAGAAGACCACGTATTCGAGGCATTCCAGAACCAGGAAAGACAAGAAGTGCAAGAACTTGTAGACCAATACGTTCTCACTCTAGCCCTTGCAGGGGTACGCGCCAGTAAATTGTTGATTGAAATGGACAATATTGAGAAAGGTATAAAATATGCTATTGCTCGACACAATATTAGATGGCTTGTAATGGGAGCTGCTCCAGATAGATATCACTCAGGTAAACTGGCAGAGGAACAGTCCAATAAAGCTAATCTTGTACGCGAACAACCATCATTATCTTGTAATATTTGGTTCATTTACAAGGACAACCTCATATGTACTAGGGCAGATAGAAAACGTACATCTGAATTTGAGACTGCCCCTTCATTGTTGGTGCTCAGTTCAAATACGGAAGCCAAACAATCTGAAAAGTTCAGTTCAGAATGTACCCCTATTCCACAGAAACATTTAGATGCTGACAATATGGAAGTAATGTTCAGAAATTTCAGTTCTCACTGTTCAGTACAATCACATAACTCTATCTATAGAGTTGTTGCTCGGTCAAAGTTGACAGATTTGCTGTTTCATGAGGAGGAAAGAGATGAAAGGGAAGAAGCAAGTGAAGTAAATGGAAGACTGGAACATGCTGTTGTTGATGCTAATACCTTCAAAGCAAAAGAACTTGAAGGGACAATGAAGAGATGCAATGTAGAAGACAATACTATGGAGGCTGAAACATTAGAAAGCTTGTGTGCTAATGAAATAAGTAGAAGAAGAGAACTAGAAGAACTATTGGCTGGGGAAAAGCAAGAATTACAGAAACTGAAGAATCAACGAGATGAAATCATGTGTGAACTGCAAATGATCCAAGATCAAAATTCAGCACTTAACAGCCAAATTGTTAAGTCTCAGTTCACAGTGACAGAATTGGAGGAGAAGATTATATCAGCGGTGGAACTCTTGATAAGTTTCAGGGAAAAACGAGATAATCTAAAAGTAGAGCATGCAAATGCAGTTAGGGAAGTCTACAAGCTGAGGAAGTTTGTAAAAGAAGATGCTCCATACTCTTATGGGACAGAATTTCCTACATTTTCTTTCATGGAGATCAATGAGGCAACCCATGATTTTGACCCATCTTGGAAGATTGGAGAGGGAAGGTATGGAAGCATTTACAAAGGACTGCTTCGCAACATGCAAGTTGCCATAAAGATGTTGCCCTCTTATGGCTGTCAGAGCCAGTTGGAGTTCCAACATCAGGTTGAGGTTTTGAGTAGGGTAAGACATCCAAACCTTGTAACACTAATTGGAAGCTGTCCAGAATCTAGGTCACTTGTTTATGATTACCTTAATAATGGCAGCCTTGAAAACCACCTTGCACACAAAGACAAGACTCCTCTTCCTTGGCAAATTCGAGTATCCATTGCTGCTGACATATGCTCTGCTCTTATCTTCCTTCACTCCAGTAGGCCTCGTATAATCCAGGGGAATTTGAAGCCCAGTAAAGTTCTCCTTGATGCGAACTTTGTTGGCAAACTTGGTGAATTGGGCATTTCTTCATTGGTTCCGCAAAGCATGCATTCAGTTGACAGTAACACAATAGGTAACAACCCAAATGAAAGTTTGGTCTATGTGGATCCGGAATATCTTGTCACTGGGAAGCTTACACCAGAATCAGACGTGTATTCATTCGGAATCATATTATTACAACTTTTAACTGGCAGACCACTTTTGGGGATCGTGAGGGATATGAAATGTGCAGTGGAGAAAGACAACCTTAAAGCAGTATTGGACTTTTCAGCTGGAGAATGGCCACTTGATCAGGCCAGACAGCTCGCGTATGTGGCATTGAGGTGTTGTGAAAAGACTTGGTTGAACCGGCCAGACCTTGTGTCAGAAATCTGGACTGTTCTTGAACTATTACGAACTTCATGCAACAACATGCCACCCTATTTGACTTCTAAGAAGCTTCATCGAGTTCCTTCCCATTTTGTCTGCCCCATATTTCAGGAAGTCATGAAAGATCCTTACATAGCTGCAGATGGCTTTACATATGAAGCAGATGCAATAAGAGGATGGTTAGAAAGTGGTCACAACACTTCGCCCATGACAAACCTAAAGCTTGAGCACATGGACCTGGTGCCTAATCATGCACTACATAATGCCATTCAGGAGTGGCAGCAACTACACACATGA 2379 0.4208 MGSIEGDEGERPEDMDETVYVAVGKNIEKSQQLLLWVVRNCADKKICVLHVHRSEAVNSSTDRRLTGSEAEDHVFEAFQNQERQEVQELVDQYVLTLALAGVRASKLLIEMDNIEKGIKYAIARHNIRWLVMGAAPDRYHSGKLAEEQSNKANLVREQPSLSCNIWFIYKDNLICTRADRKRTSEFETAPSLLVLSSNTEAKQSEKFSSECTPIPQKHLDADNMEVMFRNFSSHCSVQSHNSIYRVVARSKLTDLLFHEEERDEREEASEVNGRLEHAVVDANTFKAKELEGTMKRCNVEDNTMEAETLESLCANEISRRRELEELLAGEKQELQKLKNQRDEIMCELQMIQDQNSALNSQIVKSQFTVTELEEKIISAVELLISFREKRDNLKVEHANAVREVYKLRKFVKEDAPYSYGTEFPTFSFMEINEATHDFDPSWKIGEGRYGSIYKGLLRNMQVAIKMLPSYGCQSQLEFQHQVEVLSRVRHPNLVTLIGSCPESRSLVYDYLNNGSLENHLAHKDKTPLPWQIRVSIAADICSALIFLHSSRPRIIQGNLKPSKVLLDANFVGKLGELGISSLVPQSMHSVDSNTIGNNPNESLVYVDPEYLVTGKLTPESDVYSFGIILLQLLTGRPLLGIVRDMKCAVEKDNLKAVLDFSAGEWPLDQARQLAYVALRCCEKTWLNRPDLVSEIWTVLELLRTSCNNMPPYLTSKKLHRVPSHFVCPIFQEVMKDPYIAADGFTYEADAIRGWLESGHNTSPMTNLKLEHMDLVPNHALHNAIQEWQQLHT 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1171 792 Coils Coil 258 278 - -
Glsi12g1171 792 ProSitePatterns Protein kinases ATP-binding region signature. 444 465 IPR017441 GO:0005524
Glsi12g1171 792 ProSiteProfiles Protein kinase domain profile. 438 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1171 792 SUPERFAMILY Protein kinase-like (PK-like) 416 707 IPR011009 -
Glsi12g1171 792 CDD RING-Ubox_WDSUB1-like 722 777 - -
Glsi12g1171 792 Gene3D Transferase(Phosphotransferase) domain 1 512 709 - -
Glsi12g1171 792 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 720 792 IPR013083 -
Glsi12g1171 792 PANTHER OS02G0152300 PROTEIN 18 786 - -
Glsi12g1171 792 Pfam Protein tyrosine and serine/threonine kinase 443 691 IPR001245 GO:0004672|GO:0006468
Glsi12g1171 792 SUPERFAMILY RING/U-box 718 789 - -
Glsi12g1171 792 Gene3D Phosphorylase Kinase; domain 1 410 510 - -
Glsi12g1171 792 ProSiteProfiles U-box domain profile. 720 792 IPR003613 GO:0004842|GO:0016567
Glsi12g1171 792 SMART Ubox_2 724 787 IPR003613 GO:0004842|GO:0016567
Glsi12g1171 792 Pfam U-box domain 721 790 IPR003613 GO:0004842|GO:0016567
Glsi12g1171 792 Coils Coil 306 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1171 Glsi-ChrGlsi12 29537516 29544630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1171 15 791 U-box Gene Family AT2G45910 41.606 0.0 596
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Glsi12g1171 PK_Tyr_Ser-Thr 9.4e-32 CL0016