Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1170 ATGTATGTAATTGACCGTGACAAAGTACAGTTCTTCGTACAGGTCTATAGCTACTACATTTTATGTATTTGGTCTCCCAAGTTTCCTTTGCCACGATGGAAACACTCGAACAACATTTTCTTCGAGGATGGACTTCGCACATCATATTCTTATTTTTCTATTATCATGCCTGTTGCCAAACTTAAGGCTTCGAGCACTCCAGATGTCATGAAAACAGAGGTTGGAAATGATTCCTTAGATACCATAATCAAACAAGCAATTGGAAAAGAACCTTTCCTTTCTTTTTCAAGGGCTGGTGACAGTCCTGTGCAGTGGATTCAATTACTTCATGCATTAGATCAGCAAGAACTCCCAGGTTGGCCTATGCTCACTCCTCTGAAGGTTCAATTGCAGAAGTGTGACAAGTGTTCCCGAGAATTTTGTTCTCCAATTAACTACAGAAGACATATTCGTGTGCACCATCGGTTGAAAAAGCTTGATAAGGATTCTACTAACTACAGGGATCTGTTAGGAGCATTTTGGGATAAGCTCTCTCTAGAGGAGGCAAAGGAAGTTGTGTCATTCAAGAATGTGATGCTGGAGGAAGTTCTGGGGTCTTCAATTATAAAAGCGCTGACAACCCTTATTCGAAAACAAGGATTTTCTTCACTTCCACAGTATTATCTGAAGGCTGGTTCTGCCCTTTTGGATATTGTTCAAGCTAGATACAGTTTTCCTACATCTTCCCAGGAGTTGTTCAGCGTACTTGATGATGCCAGTGAAAAAACATTTTTATGTGGGACTGCAGCGTCGATGCAGAAATATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAGCCCAAAAACCTAGTTGCTTGCACTAGCTTCTTGCTAGAACAGATATTGGTGAAAGCATGGCTTGCCGACAAGGATGCTGAAGCATTAAGATGCCAGAAGCTGCTGGTGGAGGAGGAAGAAGCTGCTCAGAAAAGACAAGCTGAGATTTTGGAGAGGAAACGCCAGAAAAAGCTTAGACAGAAAGAACAAAAGGCAAGGGAGCAAAGGCATGAGGATGAGGAAGAAATTGAAGAGAACATCAGTATGATGGTAGAGGCTGTATCACCAGCAGAAGCATCTTTGGATACATTTGACTTTGAAGAACATAATCCAAGTACATTTACAGATCATTTTCCTTCACAACTTGTACCCTTCCAATGCCAAGACAAGGAGTCAGGTCATGATTGTGGCAGTGATCAGAACATTGAACACCAAACAGCACAAGGATATAATTATCGACGTTTACTGGTCACTGAACGACAGTTGCTGCCGAAATCGCAGTTGACTTTAGTTAATGGTCTCCATGCAACCCAGAATTCTCAAATTCCAAAGCTTGGAGTCATTAAGAAGTATGGAACCTACCGTGATCAAAGGGCAGCTCCTATAGTTAATGGTAATAAAGTATGGAGCCCAAAGCCTAAACCAGAAATTGATGGGATAATTCTTAAAGCCAGGCTACAGAAAGAATCAGACCAAGTTAAGAACCATGAAGTTTTAATTGGGTCTATATCTGTTGCTCTTGACAATTGCAGTCAATCAAAAAGCAGCTCAGTCGCATCTCAAGAGGACTGCATGGTTGAGAATCTGGCCAAGCAAAGTAGTGCTCAGGAGAAGCCAGCAATCCAGAGTGGCAACAATCGGTTAGCAGTCAAGCTTTGGAGGCCAGTTAGCCGGCATGGATCAAAAGATCCAATGCCAGTTCAAATTGGTGGTGTAGAAGCTGATTTGGATGCAATTAATAGGGAGGGGGATGATCAAAACTTGTCAGATGAAAGTTGTTTAAGGTTGTGTGACATGGACAATAGTGATAGTGGTTTTGAGAACAGTTCCTCCCATCCAGAGGACCGGGTAGGTCCAGGAAGCTTAAGAGTATCTAGCCATGCTGCAAAATCCTTTCTGGCTCAAAGATGGAAAGAAGCTATTTCATTAAATCACGTGAAATTGGTTCTTTCACCTGACTCCGAACCTCCTGGGTATCAGGAGGTACAGGATTGTGAACTAGCAGCATGTCTATCTTCAAATGTTGACAGTCGCCGCATTCTTGCAAGCTCTGAGAACCAGTTTTTGGCAAGCTCAGAAGCTGCTAAATCCAAACTCAGAATGAAGCCTGAAAAGGGTATCAAGATAAAGTACATTCCTAAACAAAAAACAGCTACCTTTTAG 2202 0.421 MYVIDRDKVQFFVQVYSYYILCIWSPKFPLPRWKHSNNIFFEDGLRTSYSYFSIIMPVAKLKASSTPDVMKTEVGNDSLDTIIKQAIGKEPFLSFSRAGDSPVQWIQLLHALDQQELPGWPMLTPLKVQLQKCDKCSREFCSPINYRRHIRVHHRLKKLDKDSTNYRDLLGAFWDKLSLEEAKEVVSFKNVMLEEVLGSSIIKALTTLIRKQGFSSLPQYYLKAGSALLDIVQARYSFPTSSQELFSVLDDASEKTFLCGTAASMQKYVFDGEAGKIGLEPKNLVACTSFLLEQILVKAWLADKDAEALRCQKLLVEEEEAAQKRQAEILERKRQKKLRQKEQKAREQRHEDEEEIEENISMMVEAVSPAEASLDTFDFEEHNPSTFTDHFPSQLVPFQCQDKESGHDCGSDQNIEHQTAQGYNYRRLLVTERQLLPKSQLTLVNGLHATQNSQIPKLGVIKKYGTYRDQRAAPIVNGNKVWSPKPKPEIDGIILKARLQKESDQVKNHEVLIGSISVALDNCSQSKSSSVASQEDCMVENLAKQSSAQEKPAIQSGNNRLAVKLWRPVSRHGSKDPMPVQIGGVEADLDAINREGDDQNLSDESCLRLCDMDNSDSGFENSSSHPEDRVGPGSLRVSSHAAKSFLAQRWKEAISLNHVKLVLSPDSEPPGYQEVQDCELAACLSSNVDSRRILASSENQFLASSEAAKSKLRMKPEKGIKIKYIPKQKTATF 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1170 733 SMART c2h2final6 131 153 IPR013087 -
Glsi12g1170 733 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 158 IPR013087 -
Glsi12g1170 733 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 56 731 - -
Glsi12g1170 733 Coils Coil 320 358 - -
Glsi12g1170 733 ProSitePatterns Zinc finger C2H2 type domain signature. 133 154 IPR013087 -
Glsi12g1170 733 MobiDBLite consensus disorder prediction 333 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1170 Glsi-ChrGlsi12 29527303 29537411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1170 75 729 C2H2 Transcription Factor Family AT4G25610 43.958 3.90e-152 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi12g1170 None None None