Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1166 ATGTTGTTCTTGCTCATCATTTGCTGGTTGGTTCCAATTTATTCCTCACCAATAAGTCCCCCTTCGGACAAAATGTTTCGCTTTCATCCCCTCGCCTTTAATAGGAGGATTTTGCTTTCACTTTCAATAACTAATTCAGCCTATCATTCTGGAGTAGTTGTTGATACAAATATGCCTTCATGGTGGGGGAAATCATCATCCAAAGAAACCAAGAAGAAAGCAAGTAAGGAAAGTTTTATTGACACATTACACCGAAAATTTAAGATCCCATCGGGAGGATCTCATAGACATTGCAATGACACAATTTCTGAGAAGGGGGCTCGGTCTCCAGCTGACTCAAGGTCTCCTTCGCCTTCCAAAGTGTCAAGGTCCCACAGTTTAACTGAATGGCCTCATGCTCAGCCACTACCACTTCCTGTCCTGCACCCTTCAAGTGTGGACCGAACAGATTCTGAAATTAGCATATCATCAAAATCAAGACTAGAGAAGGGCTCTAAGTCATCGTTGTTTCTGCTGCTTCCAAGACCTGGATGCATACGTAGTAGGTTGGACACTGCAGATTTGGATGGGGATATGGTCACTGCTTCAGTCTTTAGTGAGAGCTCTGCTGATAGTGATGAGCCAGCAGACTCAAGTCTTCGAAGCCCTCAAGCAACTGACTCCGAGAATGGGACTAGAACTGGTGCAGGCAGCCCTTCCAGCTTCATGCTCAAGGATGGATCATCTACCGTTACCAAACTAAATTCAGGAGAGGTCAAAAAGCCAGCTAACATTCTGAGTAACCATATATCTACTACATCATCAAAGCGCGGACCTTTGAGCAACCTTGTGCCAAATTTGCAGGTTCCTCCTCACGGGGCTGCCTTTTTTAGTGCTCCTGACAGCTCCATGTCAAGTCCATCAAGAAGTCCATTGAGAGCATTTGGCACCGAACAAGTTTTGAACTCTGCCTTTTGGGCTGCAAGGCCATATTCAGAGGTCAATTTAATTGGATCCGGGCAATGCTCCAGTCCAGGTTCTGGTTACAATTCTGGGAATAATTCGATGGGTGGGGACATGTCAGGACAGTTATTTTGGCAACCAAGCAGGGGTAGCCCTGAGTATTCTCCTGTACCTAGTCCCAGAATGACTAGCCCTGGTCCAAGCTCTAGAATTCAGAGTGGAGCTGTCACACCTATTCATCCTAGAGCTGGGGGAACACCCACTGAATCACAGACAGGATGGGTTGATGATTGGAAACAACAGAGTCATTGTCTGCCCCTTCCTCCTTTAACAGTTACTAAAACATCTCCTTTTTCTCATTCGAATTCGGCAGCAACATCTCCATCTATGCCAAGAAGTCCAGGAAGAGCTGACAACCCAATGAGCCCTGGCTCACGTTGGAAAAAAGGAAAGCTGCTAGGCAGAGGCACATTTGGACATGTGTATGTTGGCTTCAATAGTGCAAATGGTGAAATGTGTGCAATGAAGGAGGTAACTCTGTTTTCAGATGATGCCAAGTCTAAGGAAAGTGCTAAGCAATTGATGCAGGAAATTGCTCTATTAAGTCGTTTATGTCATCCAAATATTGTGCAGTATTATGGTTCTGAAACAGTGGATGATAAACTTTACATATACCTGGAGTATGTATCTGGTGGCTCTATATATAAACTTCTTCAAGAATATGGGCAATTTGGTGAATTAGTTATTCGTAGTTATACTCAACAAATTTTGTCAGGGCTTGCATATTTACATGCTAAAAATACTGTGCACAGGGACATTAAGGGAGCAAATATACTGGTAGATCCAAATGGCCGGGTCAAGTTAGCAGACTTTGGCATGGCAAAGCATATAACAGGGCAATCATGTCTATTATCATTCAAGGGAAGCCCTTATTGGATGGCTCCTGAGTTTATAAATAACTCTAATGGTTGCAACCTTGCTGTGGATATCTGGAGTCTTGGATGCACAGTTTTGGAAATGGCTACAACTAAGCCTCCTTGGAGTCAGTTTGAAGGGGTTGCTGCCCTGTTCAAGATTGGTAATAGCAAGGAACTCCCAACAATCCCAGATCACCTCTCAAATGAAGGAAAGGATTTTGTTAGGAAATGCCTAAAGCGTAATCCACGTGATCGTCCTTCTGCTAGTGAACTATTGGACCACCCATTTGTAAAATGTGCTGCACCTTTGGAAAGACCAATTCTGAGTCCTGAAGCTTCAGATCCAGTCTCTGGGATTGGACATGGAGCAAAAGCTTTGGGCGTTGGACAAGGACAAAATATTTCTGCCTTTGATTCAGATAGACTCGCTGTTCATTCTTCTAGAGTTTTGAAAATTAATCCTCAAGCCAGTGAAATCCATATGCCAAGGAATATATCTTGCCCTGTCTCCCCCATTGGGAGCCCACATTTACGGACAAGATCACCACAGCATATGAATGGGAGAATGTCTCCCTCTCCTATATCTAGCCCTCGGACTGCTTCTGGTGCATCCACACCTCTCACTGGAGGCAGTGGTGCCATTCCATTTAGTCTTGGAGGCTTGCTGAAGCCCTCGAACGGTGTATACCTTAATGGTCTGACTCATCATGACTCAAATGTTGACATCTTTCGAGGAATGCAAGTGGGGTCTCACATTGCATCAGAACTGGTTCCCGGTGAAAATGATGTTCTGGGGAAGCAGTTTGCATGGTCTCCTCATGGTGAGCTATATGATGCTCAATCAGTGTTGGCTGATCGTGTTAGCAGGCAACTGCTGGGGGGTAATGTAAATGTTCAGATTAACCCATCACTGGATCTAAGTCCCAACTCCTCTATGCTCAGCCGTGCAAATGGTATATGA 2820 0.4457 MLFLLIICWLVPIYSSPISPPSDKMFRFHPLAFNRRILLSLSITNSAYHSGVVVDTNMPSWWGKSSSKETKKKASKESFIDTLHRKFKIPSGGSHRHCNDTISEKGARSPADSRSPSPSKVSRSHSLTEWPHAQPLPLPVLHPSSVDRTDSEISISSKSRLEKGSKSSLFLLLPRPGCIRSRLDTADLDGDMVTASVFSESSADSDEPADSSLRSPQATDSENGTRTGAGSPSSFMLKDGSSTVTKLNSGEVKKPANILSNHISTTSSKRGPLSNLVPNLQVPPHGAAFFSAPDSSMSSPSRSPLRAFGTEQVLNSAFWAARPYSEVNLIGSGQCSSPGSGYNSGNNSMGGDMSGQLFWQPSRGSPEYSPVPSPRMTSPGPSSRIQSGAVTPIHPRAGGTPTESQTGWVDDWKQQSHCLPLPPLTVTKTSPFSHSNSAATSPSMPRSPGRADNPMSPGSRWKKGKLLGRGTFGHVYVGFNSANGEMCAMKEVTLFSDDAKSKESAKQLMQEIALLSRLCHPNIVQYYGSETVDDKLYIYLEYVSGGSIYKLLQEYGQFGELVIRSYTQQILSGLAYLHAKNTVHRDIKGANILVDPNGRVKLADFGMAKHITGQSCLLSFKGSPYWMAPEFINNSNGCNLAVDIWSLGCTVLEMATTKPPWSQFEGVAALFKIGNSKELPTIPDHLSNEGKDFVRKCLKRNPRDRPSASELLDHPFVKCAAPLERPILSPEASDPVSGIGHGAKALGVGQGQNISAFDSDRLAVHSSRVLKINPQASEIHMPRNISCPVSPIGSPHLRTRSPQHMNGRMSPSPISSPRTASGASTPLTGGSGAIPFSLGGLLKPSNGVYLNGLTHHDSNVDIFRGMQVGSHIASELVPGENDVLGKQFAWSPHGELYDAQSVLADRVSRQLLGGNVNVQINPSLDLSPNSSMLSRANGI 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1166 939 MobiDBLite consensus disorder prediction 420 447 - -
Glsi12g1166 939 ProSiteProfiles Protein kinase domain profile. 461 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1166 939 MobiDBLite consensus disorder prediction 419 462 - -
Glsi12g1166 939 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 113 730 - -
Glsi12g1166 939 MobiDBLite consensus disorder prediction 198 241 - -
Glsi12g1166 939 MobiDBLite consensus disorder prediction 341 363 - -
Glsi12g1166 939 Pfam Protein kinase domain 462 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1166 939 MobiDBLite consensus disorder prediction 106 129 - -
Glsi12g1166 939 Gene3D Transferase(Phosphotransferase) domain 1 459 733 - -
Glsi12g1166 939 MobiDBLite consensus disorder prediction 794 828 - -
Glsi12g1166 939 FunFam Mitogen-activated protein kinase kinase kinase 459 739 - -
Glsi12g1166 939 SUPERFAMILY Protein kinase-like (PK-like) 459 794 IPR011009 -
Glsi12g1166 939 SMART serkin_6 461 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1166 939 ProSitePatterns Protein kinases ATP-binding region signature. 467 490 IPR017441 GO:0005524
Glsi12g1166 939 MobiDBLite consensus disorder prediction 796 828 - -
Glsi12g1166 939 MobiDBLite consensus disorder prediction 341 407 - -
Glsi12g1166 939 MobiDBLite consensus disorder prediction 88 159 - -
Glsi12g1166 939 CDD STKc_MEKK1_plant 460 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1166 Glsi-ChrGlsi12 29488257 29499345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1166 58 928 MAP Kinase Kinase Kinase AT1G63700 57.223 0.0 856
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Glsi12g1166 Pkinase 3.2e-71 CL0016