Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1160 ATGGAAGCTGAGGTTGGGAAGAAGGAAGAGCTTCTGAAGCCGAAGATCACTGGTAAAAGCCATGTGAAGCCTAGCAAGAGGATTGGGAAGAAAGAGTGTCAACTGGTCACCTTTGATCTTCCCTACCTAGCTTTCTACTACAACCAGAAGCTCCTGTTCTACAAAGGGGATGGTGAATTTGAGGAAATGGTGAAGAAAATGAAAGATGGGCTTAGCGTAGTCATAGAGGACTTCTATCATCTAGCTGGTAGGCTAGGGAAAGATGAGGAGGAGGGGTTTTTCAAAGTAGAATATGATGATGACATGGCTGGTGTGGAGCTCAGAGAGGCAGTCGCTGATGAGATTGCAGTTGCAGATCTAACTGCAGCAGAGAGTACCAGCACTCTAAAGGAGTTTATACCTTACAATGGGATCTTGAACTTGGAAGGGATGCACAGACCCTTGTTGACAGTTCAGTTAACGAAGCTGAAAGACGGACTCGCGATGGGATGCGCGTTTAACCACGCTGTCCTCGATGGTACCTCCACGTGGCACTTCATGACCTCATGGTCGCAAACTTGCGTTGGTGATCCCTCCACGTCAATCCTACCCTTCCTTGACCGAACCAAGGCTCGAAACACGCGCGTGAAGCTGGACCTCTCATCACCCTCAGGCCCCCTGGCCTCGACCAGCGGCGATGCCAAGTCGGAGCCACCATTCAGAGAGAAGATCTTCATGTTCTCAGAGTCTGCCATTGACAAGATCAAGTCTACAGTCAACGGAAGCTCTCCATGCGACGGTTCAAAACCATTCTCAACATTCCAGGCTCTCTCTGTTCATATTTGGCGCCATGTAAGCCGTGCGCGGAACCTCAAACCCGAAGACTACACTGTCTTCACTGTCTTCGTAGATTGTCGGAAGCGGCTTGACCCGCCAATGCCGGAGACGTACTTCGGAAACCTAATACAAGCCGTATTCACCGTCACAGCAGCCGGGTTACTGTTGGCCCACCCGCCACAATTTGGTGCATCGATGATTCAGGAAGCCATTGAAGCACACAACAGCAAAGCCATTGATGAACGTAACAGAGAGTGGGAGAGTGCACCCAAGATTTTTCAGTTCAAAGACGCCGGAGTAAATTGCGTGGCGGTTGGAAGCTCGCCGAGATTTAAGGTTTACGATGTGGATTTCGGGTGGGGAAAACCAGAGAAGGTGAGGAGTGGGTCAAATAACAAGTTTGACGGGATGGTTTATTTGTACCCTGGGAAGAGTGGCGGGAAAAGCATTGACGTGGAGCTAAGCTTGGAGCCTGAGGCCATGGGAAGGTTGGAGAAAGATAAGGACTTTCTTATGGAGGATGAGAATTAA 1347 0.4974 MEAEVGKKEELLKPKITGKSHVKPSKRIGKKECQLVTFDLPYLAFYYNQKLLFYKGDGEFEEMVKKMKDGLSVVIEDFYHLAGRLGKDEEEGFFKVEYDDDMAGVELREAVADEIAVADLTAAESTSTLKEFIPYNGILNLEGMHRPLLTVQLTKLKDGLAMGCAFNHAVLDGTSTWHFMTSWSQTCVGDPSTSILPFLDRTKARNTRVKLDLSSPSGPLASTSGDAKSEPPFREKIFMFSESAIDKIKSTVNGSSPCDGSKPFSTFQALSVHIWRHVSRARNLKPEDYTVFTVFVDCRKRLDPPMPETYFGNLIQAVFTVTAAGLLLAHPPQFGASMIQEAIEAHNSKAIDERNREWESAPKIFQFKDAGVNCVAVGSSPRFKVYDVDFGWGKPEKVRSGSNNKFDGMVYLYPGKSGGKSIDVELSLEPEAMGRLEKDKDFLMEDEN 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1160 448 Gene3D - 14 214 IPR023213 -
Glsi12g1160 448 MobiDBLite consensus disorder prediction 210 231 - -
Glsi12g1160 448 Pfam Transferase family 16 442 - -
Glsi12g1160 448 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 16 443 - -
Glsi12g1160 448 MobiDBLite consensus disorder prediction 210 224 - -
Glsi12g1160 448 Gene3D - 219 439 IPR023213 -
Glsi12g1160 448 FunFam Tryptamine hydroxycinnamoyl transferase 220 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1160 Glsi-ChrGlsi12 29465344 29467897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1160 12 445 Monolignol Biosynthesis Gene Families AT5G48930 28.078 3.12e-37 139