Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1147 ATGGATACCCAAAAGCTTATACCTTTACTCCTCCTCTGTTTTATCCCCTGCTCAGTTACTTTCACTCCAAGGGATAACTACCTCCTCAACTGTGGATCACAGACCAATGCGTCTATCTTCAACCGTGTCTTCATGGCCGATTCTACGAACTCCGGCTTGGCTTTTCTCTCTGCTGAGACATCCCTTTCGCTCACGAACCAAAACCCACCTCCAAATTCGCCCACTTTGTATCATACAGCCAGAGTTTTCACGAGCACGGCGAGCTACAGATTCCATATGAAGGAAAAAGGTACTCACTTCGTACGTTTTCATTTCTCGCCCTTTTCGGCTCAAGGTTTTGATTTGAAATATGCAAAATTTAGCGTCTTGGTTAATGGGAATTCGCTTCTAAGCGATTTCCAGTTCATCAATGATACGTTGCTTAAAGAGTATATATTAAATATAGAATCAAACTTTCTTGAAACTGTGTTTAGACCTGTGGGCAATTCGGGTTTCGGCTTTGTCAATGCTATGGAGGTATTCACGGCTCCTTCGAACTTTATCATCGACTATGGAGCTAGGTTGGTTAGTCCTAGTGGGGTGGAGGAGTACACGAACCTTTCGTCCAAGGTTTTAGAAACTATTCATAGGATTAACGTTGGAGGCATGAAATTAACTCCTTTTAATGATACCCTTTGGAGGACTTGGATTCCTGATGGGGATTTTCTGGTTTTGAAGGATGCAGCTGAGCGTGCAGTAAGCACTTATACACCCAATTACCAGAAGGGAGGTGCAAGTAGAGAGATAGCTCCTGATAATGTTTATATGACTGCCCAGCAGTTGAATAGGGAAAACTCAAGTTTAGCTTCCAGATTCAATATAACTTGGAATTTTCCGATGGGTTCTGGAGGTGTTCAACACTTGGTTCGGTTGCATTTCTGTGATATTGTTAGTCCTGCACTTAACTTGCTCTACTTCGATGTGTATATCAATGGGTACTCCGCATACAAGGATCTTGATTTGTCCTCTCTTACAATCCATGTGCTTGCATCTCCAGTCTATGTAGATTTTGTCGTAGATTCTGATGATTCAGGTGCTATTCGAATTAGTGTTGGTCCTTCTGATCTGAGCAGTCCTATTAGGATGAATGCTATATTAAACGGTGCAGAGATCATGAAGATGGTCAACGTTAAGGATTCACTCATCTTACCTAAGAAGAAAAAGTCATGGGTGTTGGTAGGTTCGGTCGTTGGCGGAGTTGTTTTACTTTTGGCAATTTGTTCCCTTTTGCTTGCTTTCAAATGCAGGAAGAAGAAATCAAAACAAAGGACAGTGGAACATGTAGGCTGGACACCCTTACGTGTGTTTTGGGGGAGTTCACATAGTAGAATGTCTGAAGAAACAGCCTATGTATCTCCAAATTCGCATGGATATTTGGCCTTGAAAGTCTCTTTTTCTGATATAAAATTGGCGACAAACAATTTTGATAGAAGTCTGATTATAGGGTCTGGTGGGTTTGGCATGGTTTACAAAGGGGTATTCAGAGACAACCTCAATGTTGCAATCAAGAGAGGCATGCCTGGTTCCAAACAAGGCCTTCCAGAATTCCATACAGAAATAACAGTTCTTTCAAAAATTCGCCATCGCCATCTGGTTTCCCTTGTTGGGTATTGTGAAGAAAATTCGGAAATGATCCTAGTCTATGAGTATATGGAAAAAGGTCCACTTAAAAAGCACTTGTACGGTTCAGAACTACCGCCTCTGTCTTGGAAGCAGCGTCTTGAAATATGCATTGGTGCAGCTAGAGGTCTTCACTATCTTCACACTGGTTTTGTGCAAGGAATCATCCACCGTGATATTAAATCAACCAACATCCTGCTTGATGAAAACTATATGGCCAAGGTTGCTGATTTTGGTCTTTCAAGAACTGGGCCATGTCTGAATGAAACCCATGTGAGTACCGGTGTCAAAGGTAGCTTTGGTTACCTTGATCCTGAGTATTTTCGGAGACAGCAGCTTACAGACAAGTCAGATGTTTATTCATTTGGGGTTGTGCTTTTTGAGGTTCTTTGTGCCAGACCTGCTGTTGATACACAGCTTCCTAGAGAACAGGTGAATTTAGCAGAATGGGCACTTGAGTGCCAAAAGAAAGGGATGTTAGAGCATATTGTTGATCCCCATCTTGTAGGGCAGATTAAACCAAGCTCGTTGGGTAAATTTGGTGAAATTGCAGAGAAATGTTTGGCTGAATATGGTGTTGACAGGCCAACTATGGGTGACGTCTTATGGAATTTGGAATATGCATTTCAGCTCCAAGGAAGTGGACAGCAGAGGGAGCCAGATGCTGATACTGATAGGAGGGCTAATGAAGCTGTGAATGTGACAACTACAGTTATTTGTGGAAATTCTCCAAGCAACATAAGAACAGAGGGGGACTATGATAATGGTAGTTCAGAGATAAATACTAGCCAAGTTTTTTCGCAACTAATGACCGCTGAAGGCAGATAG 2487 0.4218 MDTQKLIPLLLLCFIPCSVTFTPRDNYLLNCGSQTNASIFNRVFMADSTNSGLAFLSAETSLSLTNQNPPPNSPTLYHTARVFTSTASYRFHMKEKGTHFVRFHFSPFSAQGFDLKYAKFSVLVNGNSLLSDFQFINDTLLKEYILNIESNFLETVFRPVGNSGFGFVNAMEVFTAPSNFIIDYGARLVSPSGVEEYTNLSSKVLETIHRINVGGMKLTPFNDTLWRTWIPDGDFLVLKDAAERAVSTYTPNYQKGGASREIAPDNVYMTAQQLNRENSSLASRFNITWNFPMGSGGVQHLVRLHFCDIVSPALNLLYFDVYINGYSAYKDLDLSSLTIHVLASPVYVDFVVDSDDSGAIRISVGPSDLSSPIRMNAILNGAEIMKMVNVKDSLILPKKKKSWVLVGSVVGGVVLLLAICSLLLAFKCRKKKSKQRTVEHVGWTPLRVFWGSSHSRMSEETAYVSPNSHGYLALKVSFSDIKLATNNFDRSLIIGSGGFGMVYKGVFRDNLNVAIKRGMPGSKQGLPEFHTEITVLSKIRHRHLVSLVGYCEENSEMILVYEYMEKGPLKKHLYGSELPPLSWKQRLEICIGAARGLHYLHTGFVQGIIHRDIKSTNILLDENYMAKVADFGLSRTGPCLNETHVSTGVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPAVDTQLPREQVNLAEWALECQKKGMLEHIVDPHLVGQIKPSSLGKFGEIAEKCLAEYGVDRPTMGDVLWNLEYAFQLQGSGQQREPDADTDRRANEAVNVTTTVICGNSPSNIRTEGDYDNGSSEINTSQVFSQLMTAEGR 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1147 828 Pfam Protein tyrosine and serine/threonine kinase 493 751 IPR001245 GO:0004672|GO:0006468
Glsi12g1147 828 SUPERFAMILY Protein kinase-like (PK-like) 465 759 IPR011009 -
Glsi12g1147 828 Gene3D Phosphorylase Kinase; domain 1 451 563 - -
Glsi12g1147 828 FunFam Receptor-like protein kinase FERONIA 564 777 - -
Glsi12g1147 828 SMART serkin_6 488 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1147 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Glsi12g1147 828 ProSiteProfiles Protein kinase domain profile. 488 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1147 828 PANTHER OS07G0166700 PROTEIN 475 765 IPR045272 GO:0004714|GO:0006468
Glsi12g1147 828 ProSitePatterns Protein kinases ATP-binding region signature. 494 516 IPR017441 GO:0005524
Glsi12g1147 828 FunFam Putative receptor-like protein kinase 26 177 - -
Glsi12g1147 828 CDD STKc_IRAK 494 759 - -
Glsi12g1147 828 Gene3D Transferase(Phosphotransferase) domain 1 564 785 - -
Glsi12g1147 828 FunFam receptor-like protein kinase FERONIA 452 563 - -
Glsi12g1147 828 FunFam Receptor-like protein kinase FERONIA 204 389 - -
Glsi12g1147 828 Pfam Malectin-like domain 29 387 IPR024788 -
Glsi12g1147 828 Gene3D - 204 389 - -
Glsi12g1147 828 Gene3D - 26 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1147 Glsi-ChrGlsi12 29368107 29370593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1147 10 828 Receptor kinase-like Gene Family AT3G46290 49.161 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Glsi12g1147 Malectin_like 1.3e-30 CL0202