Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1122 ATGTGTCCGAATGTTTCCAGGAACTATTACAGATGCAGCAGTTCGAAAGGTTGCGTGGCGAGGAAGCAGGTGGAGCGGAGCACCACTGAACCGGACACGTTCATCGTCACGTACACCGGAGACCACACGCACCCACGACCCACCCACCGGAACTCACTCGCGGGCAGCACCCGGAACAAACCATCCACCACCCTTCAGCCCGCGAGTCATGGATCCGGATCATCCGGCAATATCACTAATAGGGCATCCTCTTCCTCGCAGCTCTCTCCGACGACGCCGTTTACAGCGCCAGCGGAAAACGAAGAAGGCGCCGATGACCCGGTGCCCAATAAAGAAGTCAAGAGCCCCGACCAGGATGATGAGAAGGATATGGCATCTGACGATGACATTTTGATCCCCAATATGACGGCCATGATGGACAACATCTTCCTGGGTGTTCATCAATTCGGCAGTGGCACTGGTGGAGGAGAAGGCGGTGATCGCAGCGTTTTTGTTAATCCCACAGAGGGATCGTCTTCGAATAGTCAACCCGAGTTGACTCCGGCTCCATGGAGCTATCTCTCCAATTATGGCCGGCCCAGCCCTGGTTGA 591 0.5567 MCPNVSRNYYRCSSSKGCVARKQVERSTTEPDTFIVTYTGDHTHPRPTHRNSLAGSTRNKPSTTLQPASHGSGSSGNITNRASSSSQLSPTTPFTAPAENEEGADDPVPNKEVKSPDQDDEKDMASDDDILIPNMTAMMDNIFLGVHQFGSGTGGGEGGDRSVFVNPTEGSSSNSQPELTPAPWSYLSNYGRPSPG 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1122 196 MobiDBLite consensus disorder prediction 49 96 - -
Glsi12g1122 196 Pfam WRKY DNA -binding domain 5 45 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi12g1122 196 ProSiteProfiles WRKY domain profile. 7 47 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi12g1122 196 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 7 143 IPR044810 GO:0003700
Glsi12g1122 196 MobiDBLite consensus disorder prediction 104 121 - -
Glsi12g1122 196 MobiDBLite consensus disorder prediction 21 126 - -
Glsi12g1122 196 MobiDBLite consensus disorder prediction 165 183 - -
Glsi12g1122 196 MobiDBLite consensus disorder prediction 151 196 - -
Glsi12g1122 196 Gene3D WRKY domain 2 48 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi12g1122 196 SUPERFAMILY WRKY DNA-binding domain 5 47 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi12g1122 196 SMART WRKY_cls 4 46 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1122 Glsi-ChrGlsi12 29215831 29216421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1122 7 113 WRKY Transcription Factor Family AT5G52830 55.556 1.47e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi12g1122 WRKY 2.2e-13 CL0274