Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1113 ATGGCAGATCAGCCACCACCGCCCAAAGCCTACAAATTAACAGCCTCTTCAATCTCTTACACCAAAACAACCTCCCCTAACCCCACCATTTCTCCATTATTCTCCCTCTTCAAACGTTGTGCAACAACGCCACCTTCTTACATCCTTAAAGATGTCTCCTTCACTGCCTATCCCTCTCAAATCCTCGCCATTGTTGGCCCCAGTGGAGCTGGAAAATCCACTCTCCTCGACATTCTCGCTGCTCGAACTTTCCCCTCAAATGGCTCTCTTCTTCTCAACTATTCTCCTTTTAATCCTTCCTCTTTCCGCAAACTCTCTTCCTACGTCCCTCAACACGATGCATGCCTCCCTTTGCTCACTGTCTCTGAGACATTCGCCTTCGCTGCTTGCCTTCTCAAGCCTAAGCAATCTGACATAGCCTCCATTGTTAGCTCTCTTCTCACTGAGTTAAAGCTAACTCATTTAGCCAATACCAGGCTCGCTCGTGGTCTTTCTGGCGGTGAACGTAGAAGGGTCTCTATAGGCCTGAGCCTCCTCCATGACCCAGCTGTGTTGCTTCTCGATGAACCCACTTCTGGCCTTGATAGTACCTCTGCTTTTAATGTTATGCAGATTCTGAAATCAATTTGTGTTTCCAGAAACAGAACAATTGTTCTGTCCATTCACCAACCTAGCTTCAAGATCCTCTCTACCATTGACAGAATCTTGTTGCTCTCAAAAGGGACAGTAGTTTACCACGGAACACTTGCTTCACTTCAGGGGTTTTTACATTCAAATGGGTTCTCTGTTCCTCCTCAGCTCAATGCCTTGGAATACGCAATGGAAATACTAAACCAACTCAATGAAGTAAAACCCAATACTTCTCTGACCCTCCCATCTCTTCCTGAATCGCCCGATCAAAGTTCTACTAGTTCTCCAACTGAGAAGCTACCCACCAGAAAGATCAGGTACAAGAGTTCTAGGATCCATGAAATCTGCACTCTCTATAGCAGATTTTGGAAGATCATTTACAGAACTAGGCAGCTTCTTTTGACGAACACGGCTGAAGCACTTCTCGTTGGCCTTGTTCTAGGAACCATCTATATCAACATTGGCTTTGATAGACAAGGCATCGAGAAAAGGTTCGGTCTTTTTGCCTTCACTCTCACTTTCCTTCTGTCTTCGACCACTGAAACTCTACCCATCTTCATCAACGAAAGACCAATTATACTCAGAGAAACTTCAAGTGGGATTTACAGGCTATCCTCGTATCTCATTGCAAACACACTCGTTTTCTTGCCTTACTTGCTAGCAATTGCCATCATATACTCTATCTCAGTCTACTTCTTAGTGGGTTTGTGTGCTTCTTGGCTATCTTTTGCCTACTTCGTTTTAATCATTTACTTGATAGTACTAATGGCTAATTCATTTGTCCTCTTCTTGAGCTCTCTTGCCCCAAACTATATAGCAGGTACTTCGCTATTAACGGTGCTTCTTGCAGCATTTTTTCTCTTCTCTGGGTATTTCATCTCTAAGGAAAGCTTACCCAGATACTGGCTGTTCATGCATTTCTTTTCCATGTACAAATATGCTCTTGATGCCCTTCTTATCAACGAGTACTCATGCTTAGTCACAAGGTGTTTTATATGGTACGAAGAGAATCAGGATGAGTGCATGGTTACTGGAGGTGATGTGTTGCAGAAGAGAGGGCTCCACGAGACACAGAGATGGACCAACGTGTATATCTTGATCGGCTTCTTTGTGTTATATCGTGTTCTTTGCTTTTTGGTATTAATTAGAAGGGTTTCCAGATCCAAAACTTGA 1803 0.4376 MADQPPPPKAYKLTASSISYTKTTSPNPTISPLFSLFKRCATTPPSYILKDVSFTAYPSQILAIVGPSGAGKSTLLDILAARTFPSNGSLLLNYSPFNPSSFRKLSSYVPQHDACLPLLTVSETFAFAACLLKPKQSDIASIVSSLLTELKLTHLANTRLARGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFNVMQILKSICVSRNRTIVLSIHQPSFKILSTIDRILLLSKGTVVYHGTLASLQGFLHSNGFSVPPQLNALEYAMEILNQLNEVKPNTSLTLPSLPESPDQSSTSSPTEKLPTRKIRYKSSRIHEICTLYSRFWKIIYRTRQLLLTNTAEALLVGLVLGTIYINIGFDRQGIEKRFGLFAFTLTFLLSSTTETLPIFINERPIILRETSSGIYRLSSYLIANTLVFLPYLLAIAIIYSISVYFLVGLCASWLSFAYFVLIIYLIVLMANSFVLFLSSLAPNYIAGTSLLTVLLAAFFLFSGYFISKESLPRYWLFMHFFSMYKYALDALLINEYSCLVTRCFIWYEENQDECMVTGGDVLQKRGLHETQRWTNVYILIGFFVLYRVLCFLVLIRRVSRSKT 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1113 600 Pfam ABC-2 type transporter 222 295 IPR043926 GO:0140359
Glsi12g1113 600 FunFam ATP-binding cassette transporter 38 258 - -
Glsi12g1113 600 Pfam ABC-2 type transporter 324 533 IPR013525 GO:0016020|GO:0140359
Glsi12g1113 600 ProSitePatterns ABC transporters family signature. 164 178 IPR017871 GO:0005524|GO:0016887
Glsi12g1113 600 Gene3D - 36 258 IPR027417 -
Glsi12g1113 600 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 31 265 IPR003439 GO:0005524
Glsi12g1113 600 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 11 585 - -
Glsi12g1113 600 Pfam ABC transporter 49 192 IPR003439 GO:0005524
Glsi12g1113 600 SMART AAA_5 58 242 IPR003593 GO:0016887
Glsi12g1113 600 MobiDBLite consensus disorder prediction 288 311 - -
Glsi12g1113 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 254 IPR027417 -
Glsi12g1113 600 MobiDBLite consensus disorder prediction 288 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1113 Glsi-ChrGlsi12 29142320 29144122 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1113 42 252 Calmodulin-binding Proteins AT2G36910 30.667 2.67e-18 87.4