Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1106 ATGGAGCAGAAGCACGTTTTGTTGTCAGCATTGAGTGTGGGGGTTGGGTTGGGAGTGGGGCTTGGATTGAGTTCAGGTCAGGCAGTGCAAAAATGGGTTGGAGGAAATCGTGAGTCTGGTGAGCTTTCTGGGGAGCAGATTGAGCAGGAGCTCATGAGACAGGTGATTGATGGGAAGGACGGCAAAGTGACATTTGATGATTTTCCTTATTACTTAAGTGAAAGAACTAAAGTGTTGTTGACAAGTGCTGCATTTGTTCATTTAAAACAACTTCACTTTTCCAAGTACACCCGGAACCTTTCACCAGCGAGCAGGGCTATTTTGCTTTCCGGACCTGCAGAACTTTACCAGCAAAAGCTTGCCAGGGCTTTAGCACATTACTTTGAATCAAAGTTGTTGTTGCTAGATATTTCTGACTTCTCTTTGAAGGTGCAGAGCAAATACGGATGTGCAAGAAAAGAATCATCTTTTCAAAGGTCTTTATCTGAGGTGACTTTGGAGCGAATGTCCAGTTTGCTCAGTTCCTTTTCATTCCTCCCTTCAAGTGGCGAAACTAGAGGCACTTTACATAGGCAAAGTAGTAGTACTGGAAGTTCCAATAATCCTCCAAAGCTTTGTAGGAATGCCTCTGCTACATCTGACATGAGTAGCACTTCTTCCCAATGTGGTCCAACAAATTCAGCTCCCTTGAAGCACACAAACAGCTTGTGTGTTGATGAGAAACTCTTTCTGCAGTCACTTTACAAGGTCTTGGTTTCTATATCAGAAAGTGGTTCCATCATTTTATACATCAGGGATGTTGAGAAGCTTTTCCTCCAATCACAACGGCTATACAATTTGTTCCATAAAATGCTACAGAAACTTTCAGGGTCAGTATTGATACTGGGTTCCCAGATAGTGGATGCAGAAGATGATTGTACAGAAGTTGATGAAAGGCTCACTATGTTATTCCCTTACAACATTGGGATCAAACCACCTGAAGACGAGACTCATCTTGAAATCTGGAAAGCCCAATTGGAAAAGGACATGAAAACAATTCAGACTCAAGACAGCAGAAACCACATTGCTGAAGTACTTGCAGCAAATGACATTGAATTTGATGACTTGAATTCAATCTGCAATGAAGACACAATGATACTGAGTAATCATATCGAAGAAATTGTGGTATCTGCATTATCTTTCCATTTGATGAATACCAAGGATCCAGAATACCGAAATGGAAAGCTAGTCATATCATCCAAGAGTTTGTCCCGGGGGTTGAGTCTGTTCCAGGAAGGCAAAAGTAGCGGAGAGGATACTCTGAAGTTGGAGACTAATGAATCTAACAAGGGTACTGCTGGAGAAGAGTGTACTGGTGCAAAGAATGAGGTACGATCTGACACCCAAGCACCTGAAAACAAAAGTGAGACAGAGAAATCTAATCCTCTAGGAAAGAAAGATGGAGAGAATTCTGCTCCCACAAAAGCAGCTGAAGTTCCTCCTGATAATGAGTTTGAGAAGCGACTAAGACCAGAGGTTATACCTGCAAATGAGATAGGGGTTACATTTGCAGATATTGGTGCATTAGATGAAATTAAAGAATCACTTCAAGAGCTGGTCATGCTTCCCCTTCGAAGGCCAGACCTCTTCAAGGGAGGGCTTCTTAAGCCTTGCAAAGGTATATTGCTTTTTGGACCTCCAGGTACTGGTAAAACAATGCTTGCAAAAGCAATTGCAAATGAAGCTGGAGCAAGTTTTATCAATGTCTCAATGTCTACTATCACGTCAAAATGGTTTGGAGAAGATGAAAAGAATGTCCGAGCTCTGTTCACACTAGCAGCAAAGGTTGCCCCAACTATTATTTTTGTTGATGAGGTTGATAGCATGCTTGGGCAGCGAACAAGAGTTGGAGAGCACGAGGCCATGAGAAAGATTAAAAATGAATTCATGACCCACTGGGATGGACTATTGACAAAAGCTGGGGAGCAAATTCTTGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGCAATTATAAGACGGTTTGAGCGCAGAATCATGGTTGGTCTTCCATCTGCTGAGAACAGGGAAATGATCTTGAAAACTCTCCTAGCTAAGGAAAAGATTGAAAATATAGACTTCAAAGAGCTTGCGATCATGACAGAAGGATATAGTGGAAGTGATCTTAAGAATTTGTGCATGACTGCAGCTTTTCGACCTGTTAGGGAGCTAATAAAGCAGGAGAGATCGAAGGATATGGAAAAGAAGAAAGAAGAGGCAGAAGGCCAAAGCTCAGAAGATGCTTCAGAAGCTAAGGAAGATCAAGAAGACCAAATAATTACTCTGAGGCCTTTAAACATGGAAGACATGAAACAGGCCAAGAGTCAGGTTGCTGCAAGTTTTGCTGCCGAAGGATCAATAATGAATGAGCTGACGCAGTGGAATGAACTGTTTGGAGAAGGGGGTTCAAGGAAGAAACAGCAGCTCACTTACTTCCTTTAG 2487 0.4226 MEQKHVLLSALSVGVGLGVGLGLSSGQAVQKWVGGNRESGELSGEQIEQELMRQVIDGKDGKVTFDDFPYYLSERTKVLLTSAAFVHLKQLHFSKYTRNLSPASRAILLSGPAELYQQKLARALAHYFESKLLLLDISDFSLKVQSKYGCARKESSFQRSLSEVTLERMSSLLSSFSFLPSSGETRGTLHRQSSSTGSSNNPPKLCRNASATSDMSSTSSQCGPTNSAPLKHTNSLCVDEKLFLQSLYKVLVSISESGSIILYIRDVEKLFLQSQRLYNLFHKMLQKLSGSVLILGSQIVDAEDDCTEVDERLTMLFPYNIGIKPPEDETHLEIWKAQLEKDMKTIQTQDSRNHIAEVLAANDIEFDDLNSICNEDTMILSNHIEEIVVSALSFHLMNTKDPEYRNGKLVISSKSLSRGLSLFQEGKSSGEDTLKLETNESNKGTAGEECTGAKNEVRSDTQAPENKSETEKSNPLGKKDGENSAPTKAAEVPPDNEFEKRLRPEVIPANEIGVTFADIGALDEIKESLQELVMLPLRRPDLFKGGLLKPCKGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKAGEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLLAKEKIENIDFKELAIMTEGYSGSDLKNLCMTAAFRPVRELIKQERSKDMEKKKEEAEGQSSEDASEAKEDQEDQIITLRPLNMEDMKQAKSQVAASFAAEGSIMNELTQWNELFGEGGSRKKQQLTYFL 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1106 828 SMART AAA_5 550 687 IPR003593 GO:0016887
Glsi12g1106 828 ProSitePatterns AAA-protein family signature. 657 676 IPR003960 GO:0005524|GO:0016887
Glsi12g1106 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 513 741 IPR027417 -
Glsi12g1106 828 Gene3D - 686 767 - -
Glsi12g1106 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 375 IPR027417 -
Glsi12g1106 828 MobiDBLite consensus disorder prediction 743 772 - -
Glsi12g1106 828 MobiDBLite consensus disorder prediction 460 478 - -
Glsi12g1106 828 MobiDBLite consensus disorder prediction 183 226 - -
Glsi12g1106 828 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 46 827 - -
Glsi12g1106 828 Pfam ATPase family associated with various cellular activities (AAA) 554 684 IPR003959 GO:0005524|GO:0016887
Glsi12g1106 828 Pfam AAA+ lid domain 706 750 IPR041569 -
Glsi12g1106 828 Gene3D - 513 685 IPR027417 -
Glsi12g1106 828 MobiDBLite consensus disorder prediction 427 498 - -
Glsi12g1106 828 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 513 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1106 Glsi-ChrGlsi12 29095244 29101798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1106 548 745 Calmodulin-binding Proteins AT3G56690 36.634 4.98e-34 139