Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1100 ATGCAACTCTGCCTCACCATGGCTGCTGCTGCTTCTTGGGTCTTGTTTTTTCTGCTCTTGGCTGGTCTTAGGGGCTGCATTTCGAGCCAGATTGATTTGGGCTCCCGATTGTTCGCTATCAAGGGCCAAGCGTGGGTTTCTGATAATGGCACATTTGCCTTCGGGTTCACACCTGCAGAAACTGATGACCGATTGCTTCTGCTGGGTATTTGGTTTGCTGAGCTTCCTGGAGATCGAACTCTAGTTTGGTCGGCTAACAGAGACTCTCCTACATCTCAAAGTGCAATCTTGGAGCTCGACAATACCGGGAACCTCGTTCTCATGGACGGAGACACCACCGTCTGGACATCAAACACCTCCAGTGCCGGTGTACAAGCAGCAGTCATGGCGGAATCCGGCAACTTTATCCTCCACAATGCAGAAAACCGCCCTGTGTGGCAGAGCTTTTCTCAACCATCGGACACTCTCCTACCAAACCAACCTTTAACTGTTTCTTCAGAACTAACATCATTAAAATCTGCCTCTCATAGTGGCTATTATGCTCTCAAAATGCTTCAACAACCCACTTCCTTAAGCCTTGGCCTCACTTACAATCTCCCAGATTCTTACCTAGCTTCATCCGAATCATACACCAACTATTCCTACTGGAAAGGTCCTGATATCTCCAACGTAACAGGGCATGTCACAGCCGTTTTAGATCAAGCAGGAAGCTTTGGAATTGTTTATGGAGAATCTTCAGATGGGGCAGTTTATGTGTATAAAAATGATAACGATGATGCAGGTTTATCTTCTTCCTCTCACCAATCATCAGCATCATCTGTTCTTAGAAGATTGACACTGGAAAAGAATGGAAATTTGCGATTGTACCGTTGGGATAACGATGTAAATGGGTCAAGACAGTGGGTGCCAGAGTGGGCTGCAGTTTCAAATCCATGCGATATTGCTGGAATTTGTGGTAATGGGATTTGTAACTTGGACAGAACCAAAACAAATGCTTCTTGTACTTGCTTACCTGGAACTTCTACAGTCGACAGTGATGGACAATGCTACGAGAATTCTTCACTGGTCGGAAAATGCAATTCCCGACTTGAAAACCAGACATCCCAGTTTAGGATTTCTATAGTGCAGCAGACCAATTATTATTTTTCTGAAACTTCTGTTATAGCAAACTATAGTGACATTGCCACTGTATCAAAATGTGGGGATGCTTGCTTATCAGATTGTGACTGTATTGCTTCAGTTTATGGGCTAAACGAAGAAACACCTTACTGCTGGGTGTTACGGAGCTTGGATTTTGGGGGCTTTGAGGATACTAGCTCGACCATGTTTGTGAAGGTCAGGTCAAATGGCTCAATCACACCAAGAGGTGAAGCAGGAGGGTCTCGTAGTGATGGGTTGGGGAATGGCAAAGAGAAGGCTGTGGTTATTCCAATTGTTCTCAGCATGACACTTCTAATTGCCCTGCTCTGTTTGTTACTATACTATAGTGTTCATCGAAAAAGAACATTAAGAAGGGAGATGGAAAGCTCTTTGATCTTATCAGGTGCTCCTATGAATTTCACCTACCGCGATTTGCAAATCAGGACCTCTAACTTCTCACAATTGCTAGGAACAGGTGGATTTGGGAGTGTGTACAAAGGAAGCCTTGGAGATGGGACATTGGTGGCAGTAAAGAAACTTGATAGGGTTTTGCCTCATGGGGAGAAGGAATTTATCACTGAAGTAAACACCATTGGCTCAATGCACCATATGAACTTGGTTCGCTTATGCGGCTATTGCTCTGAGGGATCACACCGGCTTCTAGTCTATGGAATGCTTCTCTTAGAGATCATTGGTGGCCGGAGAAATCTTGACACGTCCTTTGATGCAGAAGACTTCTTCTACCCTGGTTGGGCTTTCAAGGAGATGACAAATGGGTCACCAATCAAAGTAGCAGATAGAAGATTAAATGGGGCTGTTGATGAAGAAGAGCTGACGAGAGCTCTGAGAGTTGCCTTTTGGTGCATCCAAGATGAGGTTTTCATGAGACCAACAATGGGGGAAGTGGTGAGGATGCTGGAAGGGTCAATCAACATTAACACACCACCAATGCCACAGACAGTACTAGAGTTAATTGAGGAAGGTTTAGACCAAGTATACAGAGCTATGAAAAGAGAGTATACCCATTTCAGCTCATTCACCATGACTACCCATCCTTCATCTCTTGCTACACGTAGCAATTCCACTATGTCACCAAGATAG 2241 0.4471 MQLCLTMAAAASWVLFFLLLAGLRGCISSQIDLGSRLFAIKGQAWVSDNGTFAFGFTPAETDDRLLLLGIWFAELPGDRTLVWSANRDSPTSQSAILELDNTGNLVLMDGDTTVWTSNTSSAGVQAAVMAESGNFILHNAENRPVWQSFSQPSDTLLPNQPLTVSSELTSLKSASHSGYYALKMLQQPTSLSLGLTYNLPDSYLASSESYTNYSYWKGPDISNVTGHVTAVLDQAGSFGIVYGESSDGAVYVYKNDNDDAGLSSSSHQSSASSVLRRLTLEKNGNLRLYRWDNDVNGSRQWVPEWAAVSNPCDIAGICGNGICNLDRTKTNASCTCLPGTSTVDSDGQCYENSSLVGKCNSRLENQTSQFRISIVQQTNYYFSETSVIANYSDIATVSKCGDACLSDCDCIASVYGLNEETPYCWVLRSLDFGGFEDTSSTMFVKVRSNGSITPRGEAGGSRSDGLGNGKEKAVVIPIVLSMTLLIALLCLLLYYSVHRKRTLRREMESSLILSGAPMNFTYRDLQIRTSNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDRVLPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYGMLLLEIIGGRRNLDTSFDAEDFFYPGWAFKEMTNGSPIKVADRRLNGAVDEEELTRALRVAFWCIQDEVFMRPTMGEVVRMLEGSININTPPMPQTVLELIEEGLDQVYRAMKREYTHFSSFTMTTHPSSLATRSNSTMSPR 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1100 746 PANTHER OS07G0415500 PROTEIN 13 603 - -
Glsi12g1100 746 CDD B_lectin 42 152 IPR001480 -
Glsi12g1100 746 SMART blect_4 36 152 IPR001480 -
Glsi12g1100 746 Gene3D - 28 151 IPR036426 -
Glsi12g1100 746 FunFam serine/threonine-protein kinase PBS1-like 498 605 - -
Glsi12g1100 746 Pfam Protein kinase domain 533 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1100 746 Pfam D-mannose binding lectin 80 166 IPR001480 -
Glsi12g1100 746 PIRSF SRK 603 736 IPR024171 GO:0004674
Glsi12g1100 746 PIRSF SRK 1 603 IPR024171 GO:0004674
Glsi12g1100 746 ProSiteProfiles Bulb-type lectin domain profile. 30 150 IPR001480 -
Glsi12g1100 746 SUPERFAMILY Protein kinase-like (PK-like) 508 603 IPR011009 -
Glsi12g1100 746 ProSiteProfiles Protein kinase domain profile. 530 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1100 746 ProSitePatterns Protein kinases ATP-binding region signature. 536 559 IPR017441 GO:0005524
Glsi12g1100 746 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 154 IPR036426 -
Glsi12g1100 746 Gene3D Phosphorylase Kinase; domain 1 494 603 - -
Glsi12g1100 746 SMART tyrkin_6 530 686 IPR020635 GO:0004713|GO:0006468
Glsi12g1100 746 Gene3D Transferase(Phosphotransferase) domain 1 604 703 - -
Glsi12g1100 746 FunFam Serine/threonine-protein kinase 32 150 - -
Glsi12g1100 746 SUPERFAMILY Protein kinase-like (PK-like) 603 711 IPR011009 -
Glsi12g1100 746 Pfam S-locus glycoprotein domain 250 339 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1100 Glsi-ChrGlsi12 29030547 29034369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1100 603 706 Receptor kinase-like Gene Family AT2G43700 23.077 9.94e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Glsi12g1100 S_locus_glycop 4.3e-10 No_clan