Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1076 ATGGAGGATTTTTGGAGCATGTTTTGTGGAGAAGCTGGTTGTTCAGAAAGTGGGGGAAAGCCTTGCAGTTATGATTTTGAGCTTTTGAGAGATCCTTCAACGTGTATCAATCATTTGTTCATCATTTGCCTTGACGTGTTGCTGCTGATCATGCTCTTATCCGTTGTGTTACAGAGGTCATCATCGAAGACATTTCAGGGTCTAGTCCGGGTACAAAGGTTTTCAAATTTGCAGGTAGTTTCTGCCATAGCCAATGGTTGTCTTGGGTTAGTGCACTTGTGCTTAGGCGTTTGGGTTCTAGAGGAGAATTTGAGGAAAACCCACTCTGCTTTTCCTATCAACTGGTGGTTGCTAGAATTTTCTCAGGGATTCACTTGGTTGTTGGTGGGTTTAACAGTAAGTCTTCGCTTGAAAGAACTTCCAAGATCTTGGTTGCGGTTATTTTCTGTTCTTGTCTTCTTAGTTTCTAGCATTTTCTGTGCTATATCCTTGTTTTATGTCATTAGCGGCAGAGAAGTGTCCCTTAAGGTAGCTTTAGATGTTCTATCTTTTCCAGGAGCAACATTGTTGCTTATATGCTCATACAAGGCATATAATTATGAAGACACTGACCGTGAAAGCCTTTATGCTCCTTTAAATGGTCAGTCCAATGACATTGGTAAAACTGGTTCTCTTGACCATGTGACCCCATTTTCCTATGCTGGATTCTTCAGCAAAATGTCATTTTGGTGGTTGAATCCATTGATGAAAAGGGGCACGGAGAAAACAATTCAGGATGAAGATATCCCGAAGTTGAGGGAGGCAGATCAAGCTGAAAGTTGTTATTTCGTGTTTCTGGACCAACTGAACAGACAGAAACAGAAAGAATCATCATCGCAGCCATCGGTTTTGAGGACAATAATTTTGTGCCACTGGAGGGAGATTTTGATATCTGGGTTATTTGCATTGCTAAAGGTACTCACTATATCTGCTGGTCCACTACTTCTGAATGCTTTTATATTGGTTGCTGAGGGTAAAGGGAGTTTCAAATATGAAGGTTATTTATTGGCCATATCACTTTTCTTAATCAAGATCTTAGAGTCACTATCGCAAAGGCAGTGGTACTTCCGTAGCAGACTTATTGGTCTAAAAGTTAGGTCTTTGCTTACTGCAGCCATTTATAAAAAGCAACTGAGGTTATCCAATGCTTCAAGGTTGATCCATTCTGGCGGCGAGATTATGAATTATGTGACTGTAGATGCTTATCGAATTGGAGAATTCCCATTTTGGTTTCACATGACTTGGACAACAATCGTCCAACTATGTATTGCATTGGTAGTTCTTTTCCATGCTGTGGGGCTAGCCACAATTGCTTCCTTGGTGGTTATAGTTCTCACTGTGCTCTGCAATACTCCGCTTGCTAAGTTACAGCATAAGTTTCAGAGCAAACTTATGGTGGCACAAGATGAGAGATTGAAGGCTACTTCTGAGGCCCTTGTGAATATGAAAGTGTTGAAGCTATATGCATGGGAAACCCATTTTAAGAATGCTATAGAAAGTTTAAGGAAGGTGGAGCTCAAATGGTTATCTGCAGTGCAGTTAAGAAAGGCATACAATGCTTTTCTCTTTTGGTCCTCCCCGGTTTTGGTCTCTGCTGCTTCGTTCGGGGCATGTTACTTCCTGAAAGTTCCTTTACATGCAAGTAATGTTTTCACCTTTGTGGCAACTTTACGCCTTGTTCAAGATCCAATCAGAACCATCCCTGATGTTATTGGGGTGGTCATTCAAGCAAAAGTCGCATTTTGTAGGATTGTGAAATTCCTTGAGGCACCAGAGCTGCAGAGTGCAAATGTCAGAAAGAAATGCTTAAGTGACAGTCTCAATGGCTCCATTCTAATAAAGTCGGCTGACTTTTCATGGGAAGATAATGTATCAAAGCCCACTCTAAGAAACATAAATCTAGAGGTTATACCTGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCTGGCAAATCAACTCTATTAGCAGCAATTCTTGGAGAAGTTCCTAATACTCAAGGATCCATTTCAGTTCACGGAAAGTTTGCCTATGTTTCTCAAACAGCATGGATACAGACAGGTACAATAAGGGAGAATATATTGTTTGGGTCAGCTATGGATACTAGAAGGTATCAAGAAACACTTGAAAGGTCTTCTTTAGTGAAGGATCTTGAGTTATTTCCCCATGGTGATCTCACAGAAATAGGGGAGAGAGGAGTTAACCTGAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCTCGTGCTCTCTATCAGAATGCTGATATATATCTCTTGGATGATCCATTCAGCGCTGTTGATGCACATACTGCCACAAATTTGTTTAATGAATATGTCACGGAGGCACTTAAAGGAAAGACAGTCCTACTTGTAACTCATCAAGTTGATTTCCTTCCAGCATTTGATTCTATTTTGCTGATGTCTGATGGGGAAATCCTACAAGCTGCCCCCTATCACCACCTACTGTCCTCAAGCCAGGAATTTCAGGACCTTGTCAATGCACACAAGGAGACTGCTGGTTCTGAAAGGCTTCAAGATGTGGCTTCTGCCCAGACACGGGCAAATTCTGCCAGAGAGATTAATAAATCTTATGTAGAGAAACAGTTTAAAGCATCAGAAGGTGATAAATTAATTAAGCAAGAAGAGAGAGAAATAGGAGACACGGGGTTCAAGCCGTACTTGCAGTATCTGAATCAAAACAAGGGTTATATATACTTCTCTGTTGCTGTCATTTCCCACCTTATATTTGCGATTGCTCAGATATTACAGAACTCATGGATGGCGGCTAATGTTGAGAATCCCCATGTTAGCACGTTGCGATTGATCGTGGTGTACTTGTTGATTGGAGTTATTTCAACTTTGTTCTTGTTGACCAGAAGTCTTGTTGCAGTTGCAATGGGTCTTCAATCGTCAAAATCTTTGTTTTCACAGCTACTGAACTCCCTTTTTCGTGCTCCCATGTCTTTTTATGATTCCACGCCTTTGGGAAGGATACTTAGTAGGGTCTCATCCGATCTGAGCATTGTTGATCTTGATGTCCTATTCAGCCTTATTTTTACTGTTGGATCCACTATAAATTGTTATTCTAATCTTACAGTTTTAGCCGTTGTTACCTGGCAAGTCTTGTTTGTCTCTATACCAATGGTTTATATTGCAATTCGCTTGCAGAGATACTACTTTGCCTCTGCGAAAGAATTGATGCGGATGAATGGCACAACAAGATCCTTTGTAGCTAACCATCTAGCTGAATCTGTTGCTGGAGCTGTGACAATAAGGGCTTTTGAGGAGGAAGATCGTTTTTTTGCCAAGAATCTTGATTTGATTGATGTCAATGCTTCTCCTTTCTTCCATTATTTTTCAGCAAATGAGTGGTTGATTCAACGTTTAGAAACAGTCAGTGCAGTTGTGCTTGCCTCTGCGGCACTCTGCATGGTTGTTCTTCCACCTGGGACTTTCTCCTCTGGATTTATTGGCATGGCTCTCTCTTACGGCCTCACATTAAATGCATCCCTTGTATTTTCAATTCAAAATCAGTGCACTCTATCAAATTACATGATATCAGTAGAGAGGCTAAATCAATACATGCATATACCAAGTGAGGCCCCAGAAGTCATTGAAGAAAATCGCCCTCCTGTGAATTGGCCAACTGTAGGCAAAGTAGAAATAAATAATTTGCAGATAAGATATAGGCCTGATGCACCACTTGTACTCCGAGGGATCACATGCACATTTGAAGGAGGGCACAAGATTGGCATTGTCGGCCGGACTGGCAGTGGGAAGTCCACTCTTATAGGTGCTTTGTTCCGTCTCGTGGAGCCAGCAGGTGGAAAGATTATAGTTGATGGCATAGACATTTGTTCTATTGGGCTCCATGATTTGAGGTCACGTTTTGGTATCATACCTCAAGATCCCACTCTTTTTAATGGAACAGTTAGATATAATTTGGACCCTTTATCTCAACACACTGATCAAGAGATATGGGAGGTTCTTGGAAAGTGCCAGTTGCGAGAGGCTGTCCAAGAGAAAGAAGGGGGCTTAGATTCTTCAGTTGTGGAAGATGGATCAAACTGGAGCATGGGACAACGACAATTATTCTGTTTGGGGCGTGCTCTTCTAAGGAGAAGCCGAATTTTGGTGCTTGATGAAGCGACTGCATCTATTGATAATGCCACTGACTTGATTCTTCAGAAAACTATAAGGAGTGAGTTTGCAGATTGCACTGTAATCACAGTAGCCCACAGGATACCAACCGTGATGGATTGCACTAAGGTTCTTGCCATTAGTGATGGAAAATTGGTGGAGTATGATGAGCCAATGAACCTGATGAAGAGGGAAGAATCACTGTTTGGTCGGCTTGTGAAGGAATACTGGTCTCATCTTCAGTCTGCAGAATCACATTAA 4440 0.4164 MEDFWSMFCGEAGCSESGGKPCSYDFELLRDPSTCINHLFIICLDVLLLIMLLSVVLQRSSSKTFQGLVRVQRFSNLQVVSAIANGCLGLVHLCLGVWVLEENLRKTHSAFPINWWLLEFSQGFTWLLVGLTVSLRLKELPRSWLRLFSVLVFLVSSIFCAISLFYVISGREVSLKVALDVLSFPGATLLLICSYKAYNYEDTDRESLYAPLNGQSNDIGKTGSLDHVTPFSYAGFFSKMSFWWLNPLMKRGTEKTIQDEDIPKLREADQAESCYFVFLDQLNRQKQKESSSQPSVLRTIILCHWREILISGLFALLKVLTISAGPLLLNAFILVAEGKGSFKYEGYLLAISLFLIKILESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSNASRLIHSGGEIMNYVTVDAYRIGEFPFWFHMTWTTIVQLCIALVVLFHAVGLATIASLVVIVLTVLCNTPLAKLQHKFQSKLMVAQDERLKATSEALVNMKVLKLYAWETHFKNAIESLRKVELKWLSAVQLRKAYNAFLFWSSPVLVSAASFGACYFLKVPLHASNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFCRIVKFLEAPELQSANVRKKCLSDSLNGSILIKSADFSWEDNVSKPTLRNINLEVIPGQKVAICGEVGSGKSTLLAAILGEVPNTQGSISVHGKFAYVSQTAWIQTGTIRENILFGSAMDTRRYQETLERSSLVKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATNLFNEYVTEALKGKTVLLVTHQVDFLPAFDSILLMSDGEILQAAPYHHLLSSSQEFQDLVNAHKETAGSERLQDVASAQTRANSAREINKSYVEKQFKASEGDKLIKQEEREIGDTGFKPYLQYLNQNKGYIYFSVAVISHLIFAIAQILQNSWMAANVENPHVSTLRLIVVYLLIGVISTLFLLTRSLVAVAMGLQSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVLFSLIFTVGSTINCYSNLTVLAVVTWQVLFVSIPMVYIAIRLQRYYFASAKELMRMNGTTRSFVANHLAESVAGAVTIRAFEEEDRFFAKNLDLIDVNASPFFHYFSANEWLIQRLETVSAVVLASAALCMVVLPPGTFSSGFIGMALSYGLTLNASLVFSIQNQCTLSNYMISVERLNQYMHIPSEAPEVIEENRPPVNWPTVGKVEINNLQIRYRPDAPLVLRGITCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIIVDGIDICSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTDQEIWEVLGKCQLREAVQEKEGGLDSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRSEFADCTVITVAHRIPTVMDCTKVLAISDGKLVEYDEPMNLMKREESLFGRLVKEYWSHLQSAESH 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1076 1479 SUPERFAMILY ABC transporter transmembrane region 297 602 IPR036640 GO:0005524|GO:0016020
Glsi12g1076 1479 Gene3D - 1216 1468 IPR027417 -
Glsi12g1076 1479 FunFam ABC transporter C family member 10 607 860 - -
Glsi12g1076 1479 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524|GO:0016887
Glsi12g1076 1479 Gene3D ABC transporter type 1, transmembrane domain 881 1214 IPR036640 GO:0005524|GO:0016020
Glsi12g1076 1479 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 232 1467 - -
Glsi12g1076 1479 CDD ABCC_MRP_domain1 624 824 - -
Glsi12g1076 1479 Pfam ABC transporter 1250 1398 IPR003439 GO:0005524
Glsi12g1076 1479 CDD ABCC_MRP_domain2 1231 1451 - -
Glsi12g1076 1479 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Glsi12g1076 1479 SUPERFAMILY ABC transporter transmembrane region 907 1213 IPR036640 GO:0005524|GO:0016020
Glsi12g1076 1479 FunFam ABC transporter C family member 10 292 605 - -
Glsi12g1076 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 847 IPR003439 GO:0005524
Glsi12g1076 1479 Pfam ABC transporter transmembrane region 917 1176 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi12g1076 1479 Pfam ABC transporter transmembrane region 309 574 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi12g1076 1479 FunFam ABC transporter C family member 3 1216 1468 - -
Glsi12g1076 1479 SMART AAA_5 651 824 IPR003593 GO:0016887
Glsi12g1076 1479 SMART AAA_5 1259 1451 IPR003593 GO:0016887
Glsi12g1076 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 847 IPR027417 -
Glsi12g1076 1479 FunFam ABC transporter C family member 5 882 1214 - -
Glsi12g1076 1479 Gene3D ABC transporter type 1, transmembrane domain 297 599 IPR036640 GO:0005524|GO:0016020
Glsi12g1076 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1233 1467 IPR003439 GO:0005524
Glsi12g1076 1479 CDD ABC_6TM_ABCC_D2 919 1208 IPR044726 GO:0140359
Glsi12g1076 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 921 1196 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi12g1076 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1222 1459 IPR027417 -
Glsi12g1076 1479 Gene3D - 600 872 IPR027417 -
Glsi12g1076 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi12g1076 1479 Pfam ABC transporter 642 776 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1076 Glsi-ChrGlsi12 28566283 28573332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1076 618 871 Calmodulin-binding Proteins AT2G36910 29.304 9.54e-25 110