Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1074 ATGCGTTCTCACTCTCTGCTGCTCTTGTGGGTCCATTTCTTTTTCTTTATCAACCTCAATTTTCCCTCACTTTCTATCCATTTCTTGCCTTCGGAAAACGTAACCATCTTTGGTGACGCCTATTTCAGAAACAACGCCATTAGTCTTACCCAAGAACTCAGCTGCCTTTCTTCTTCTTCATCATCTTCCACTTCTTCTTCTTCTGGGGTGGGAAGAGCTTTCTATGTATACCCAGTTCGCTTTCTTGATTCTGCAACAAACTCAACGGCCTCTTTCTCATGCCGCTTCTCTTTCTCAATCATTTCCTCCCCATCGTGTCATTCTGGCGATGGCATTGCCTTTATGATCACCTCGAACACCGATGTAGCCAGCTTCTCTCGTGGGTACATGGGTCTCCCGGCACCATCTATAAATCAACAAGATTCTTACTTTGCTGTGGAATTTGACACCAATTTCGATCCTTCACTTGGTGACATTAATGGGAATCACATTGGTATTGATGTTAATACAATCATGTCTATCGCTTCAGTGGATGCTATTTCTAGGGGAATTGATCTGAAGAGTGGGAGAAAGATTAATGCGTGGATTGAGTACAGAGACGCCTTGAAAATGGTTCGCGTGTGGGTTGGGCACTCTCCTGCTAGGCCTCGAACTCCTGTTTTGGTTGCTCAGGTTGACCTTTCTGAGCAACTCAAGGAGTTTATGCATGTGGGTTTCTCTGCCTCCAATGGGAAGGGCTCAGATATTCACATTGTTGACCATTGGCAATTCAAAACTTTTGGGTTCTTCAGTTCAGTGAGTCCTATGGATATGGTAGAAGAAGGGGACTGTTTGTTGTGCTATCCAGAGAATTCTACTGTAGCCACTCAACACATAGATACCCATCGCAGGAAGAAAAAGATAGGGGAGATGGCTCTTGGATTTGGAGGCATAACTGCATTTGTAGTCTCTGTATTAGCTGCGGTTGTTGTAATCAGCGTTTTCTTGACAAGGAAAAAGGGTATTGCTAGAAAGGCGAGAGAAGACCAGAATCGTGAATTTCAAACGACAAAACTGCCTACAAGATTGTCACTTTCTGATATTAAATCAGCCACAATGGGATTCAATAGAGATAGACTTGTTGGGGAAGGGGCATCAGCAAAGGTTTATAAAGGGTCTCTTCCATATGGAGGAGATGTGGCAGTGAAAAGATTTGAGAGGATTAATGGTTTAGACTGTTTGCGTAATCCGTTCACCACTGAGTTTGCCACAATGGTGGGTTGCTTAAGGCACAAGAACTTGGTTCAGCTTCAAGGGTGGTGTTGTGAGCAGGCTGAGTTAGTCCTGGTCTATGAGTACCTACCTAATGGGAGCCTCAACAAAATTCTACATAAGAACTTCAATTCTGCCGTGGTCCTCTCATGGAAGCAAAGGGTTAATATACTTCTTGGGGTTGCTTCTGCGCTTACATATCTTCACGAAGAATGTGAGAGACAAATTATTCACAGAGATGTGAAGACTTGCAACATAATGCTTGATGCAGATTTTAATGCCAAGCTTGGGGATTTTGGTCTAGCAGAAGTTTATGAGCATAGTTCTAACACAAGGGAAGCTACTATACCTGCGGGAACAATGGGATATCTTGCCCCTGAATATGTTTTTTCTGGTGTTCCAACTGTGAAGACTGACGTATACAGCTTTGGGGTAGTGGTGCTAGAAGTGGCAACAGGGAGGAAGCCTGTTGAAGAAGATGGAACTGTGGTTGTTGATTACGTTTGGAAGTTGTGGGAAAAGAGGAAACTCATTGAAGCTGCTGATCCAAGGTTGATGGGAAAGTTTGATGTGCTAGAGATGGAGAGAATGCTCATGGTGGGGCTTGTTTGTGTGCACCCAGACTATGATAGTAGGCCAAGAGTGAGAGATGCAGCTAGAATTCTCAAGGGAGAAGCACCACTTCCTTCGCTACCAGCCAGTAAACCACGGGTGAGAATTAGGCCTATTTTGCCAAATGATAGTGAGGAAATATTGAATGTTGTTGGAAATAGACCCAGTATAGATGAGGCTCCATATTTGACCCCTATGAGCCAGTTTAACTAG 2076 0.4383 MRSHSLLLLWVHFFFFINLNFPSLSIHFLPSENVTIFGDAYFRNNAISLTQELSCLSSSSSSSTSSSSGVGRAFYVYPVRFLDSATNSTASFSCRFSFSIISSPSCHSGDGIAFMITSNTDVASFSRGYMGLPAPSINQQDSYFAVEFDTNFDPSLGDINGNHIGIDVNTIMSIASVDAISRGIDLKSGRKINAWIEYRDALKMVRVWVGHSPARPRTPVLVAQVDLSEQLKEFMHVGFSASNGKGSDIHIVDHWQFKTFGFFSSVSPMDMVEEGDCLLCYPENSTVATQHIDTHRRKKKIGEMALGFGGITAFVVSVLAAVVVISVFLTRKKGIARKAREDQNREFQTTKLPTRLSLSDIKSATMGFNRDRLVGEGASAKVYKGSLPYGGDVAVKRFERINGLDCLRNPFTTEFATMVGCLRHKNLVQLQGWCCEQAELVLVYEYLPNGSLNKILHKNFNSAVVLSWKQRVNILLGVASALTYLHEECERQIIHRDVKTCNIMLDADFNAKLGDFGLAEVYEHSSNTREATIPAGTMGYLAPEYVFSGVPTVKTDVYSFGVVVLEVATGRKPVEEDGTVVVDYVWKLWEKRKLIEAADPRLMGKFDVLEMERMLMVGLVCVHPDYDSRPRVRDAARILKGEAPLPSLPASKPRVRIRPILPNDSEEILNVVGNRPSIDEAPYLTPMSQFN 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1074 691 SMART serkin_6 368 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1074 691 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 266 IPR013320 -
Glsi12g1074 691 PANTHER - 58 646 - -
Glsi12g1074 691 Gene3D - 18 265 - -
Glsi12g1074 691 Pfam Legume lectin domain 28 259 IPR001220 GO:0030246
Glsi12g1074 691 FunFam L-type lectin-domain containing receptor kinase VIII.1 447 657 - -
Glsi12g1074 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
Glsi12g1074 691 CDD lectin_legume_LecRK_Arcelin_ConA 17 261 IPR001220 GO:0030246
Glsi12g1074 691 Gene3D Transferase(Phosphotransferase) domain 1 447 644 - -
Glsi12g1074 691 CDD STKc_IRAK 374 641 - -
Glsi12g1074 691 Gene3D Phosphorylase Kinase; domain 1 329 446 - -
Glsi12g1074 691 FunFam L-type lectin-domain containing receptor kinase S.6 17 273 - -
Glsi12g1074 691 ProSiteProfiles Protein kinase domain profile. 368 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1074 691 Pfam Protein kinase domain 369 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1074 691 FunFam L-type lectin-domain containing receptor kinase S.6 334 446 - -
Glsi12g1074 691 SUPERFAMILY Protein kinase-like (PK-like) 347 639 IPR011009 -
Glsi12g1074 691 ProSitePatterns Protein kinases ATP-binding region signature. 374 396 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1074 Glsi-ChrGlsi12 28533111 28535186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1074 1 691 Receptor kinase-like Gene Family AT5G42120 56.596 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Glsi12g1074 Pkinase 3.4e-41 CL0016