Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1072 ATGCCCGCTCTTCGCCCGTGGGCCACCGTTACCGTTCTGAGAACCCGCTTCTACAAGGTCCGAACACAAGCGATCGCAGAGGGTGGTGGCGTTTTCGTCAATTTCTCACATGGAATGGCAGATCTTGCTAGCTACGGGAATGCCCACCGCGACATCGAGCAGGCACTGATTGCTTTGAAAAAGGGCGCTCAGCTGCTTAAATATGGTCGTAAAGGAAAGCCCAAGTTTTGTCCATTTAGACTTTCCAGTGATGAATCATCTTTAGTCTGGATATCAAGTAGTGGAGAGAGAAGCCTGAAGCTATCTTCTGTCTCAAGACTTATTCCTGGACAAAGAACTGCTGTTTTCCAACGTTATCTGCGTCCTGAGAAGGATTATTTGTCTTTTTCACTTATTTATAACAACGGAAAGCGGTCCCTTGATTTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGCCTCAAAGCACTGATATCTTCTGTTCAAGGTGGGCGGTCCAAAATTGATGGATGGACTGATGGGGGCCTCTATCTTGATGATAGCAGAGACTTGACTTCAAATCGTCCAAGTGAAAGTTCAGTTAGTGCTTCACAAGATATCAGCTCTCCTGACATTTCTGTGAGTCTTAATTCAAATTCTTCTCCAAAGTCCTTTCGGCTTGAGAATACTGTGAATTCTGAAAGGTCACATGCACCATCAGACCCAACAAATATGCAAGTGAAAGGATCTAGTTCAGATGCTTTTCGTGTTAGTGTTTCAAGTGCCCCTAGTACATCCAGTCATGGGTCTGCACCAGATGATTGTGATGCTCTCGGGGATGTATACATATGGGGGGAGGTAATCTGTGAGAACATTGTGAAAGTTAGTGCTGACAAAAATGACAGTTATTTTAGCCCAAGGACAGATGTGCTTCTTCCTAGGTCACTGGAGTCCAATGTAGTTTTAGATGTACATCATATAGCATGTGGTGTTAGACATGCTGCTCTAGTCACAAGGCAAGGTGAGATTTTTACATGGGGTGAAGAATCTGGGGGACGGCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTTTAGTTGAAGCATTGGCCTCTACAGTTGTTGATTTTGTTGCATGTGGGGAGTTCCATACCTGTGCAGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGTACTGATATTAGTCATTGGATACCAAAGAGAATTGGAGGTCCACTAGAGGGACTTCAGGTTTCTTTAGTCACTTGTGGTCCATGGCACACAGCCTTGGTAACTTCAACTGGGCAGCTTTTTACATTTGGTGATGGAACATTTGGTGTCTTGGGCCATGGATCTAGGGAAAATGTTTCTTATCCTAGAGAAGTAGAATCCTTATCAGGGTTGAGGACAATAGCTGTTGCATGTGGAGTATGGCATACTGCTGCTGTGGTAGAGGTCATTGTAACACAATCTAGTGCAAGTGTATCGTCAGGTAAATTGTTTACCTGGGGTGATGGAGATAAAAATCGCCTTGGACATGGGGACAAGGAGGCCCGGCTTAAACCAACTTGTGTGCCTTCACTGATTGATTACAATTTTCATAAAATTGCTTGTGGGCACAGCTTGACAGTTGGCCTGACAACATCAGGACATGTTTTCACCATGGGAAGCACTGTTTATGGTCAACTTGGGAATCCCAAGTCTGATGGGAAGCTGCCCTGCTTGGTTGAAGATAAGCTTGCTGGAGAATCCGTAGAAGAAATTGCATGTGGTTCATATCATGTTTCAGTTTTAACGTCCAAAAATGAAGTTTATACATGGGGGAAGGGTGCCAATGGAAGGTTGGGTCATGGAGATGTTGAAGATCGGAAAATACCAACTTTGATTGAAGCTTTGAAGGATAGACATGTAAAATATATTGCATGTGGTTCAAACTACTCTGCTGCAATATGCCTTCATAAATGGGTATCTGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAAGCATTTGGCTTCACTAGAAAGAGGCACAATTGTTATAATTGTGGACTTGTGCACTGCCATTCATGCAGTTCAAGGAAAGCATTAAGAGCAGCTCTGGCTCCTAATCCTGGTAAGCCATACCGTGTTTGTGATTCTTGTCATGCTAAATTGAACAAGGTGGCAGAAGCTGGCAGTAATAACAGGAGGAATGCTATGCCACGTTTGTCGGGTGAGAACAAGGATAGGTTAGACAAGTTTGAGATAAGAGTGTCCAAGCCAGTGATTCCTTCTAATTTGGATTTGATAAAGCAGCTAGATAGTAAAGCAGCTAAACAGGGGAAGAAGGCTGATACATTTGCCCTAGTTCGATCCTCGCAAGCCCCTTCATTGCTGCAGCTGAAAGATGTTGTCTTGTCTACTGCTGTTGACCTGAGACGAACAGCCCCAAGACCAGTTCTTACACCGTCTGGAGTAAGTTCCAGGTCTGTGTCTCCTTTCTCTAGAAGACCAAGCCCCCCTCGATCGGCTACGCCTATTCCGACAACATCTGGGCTTTCCTTCTCCAAAAATATTACTGATAGTTTGAAGAAAACAAACGAACTTTTAAATAAAGAAGTGCTGAAGCTACGGTCTCAGGTTGAGAGCCTGAGACAGAGATGTGAACTGCAAGAAGTAGAGCTTCAAAGGTCAGAAAAGAAAACTCAGGAAGCTATGGCAGTGGCTGCTGAGGAGTCTGCTAAATCCAAAGCTGCAAAAGAAGTTATTAAGTCACTTACAGCACAGCTCAAAGATCTTGCTGAGAGGCTTCCTCCCGGAGTTAATGATTCTGAGAACATCAGACCAGCTTACCTTCCAAATGGTTTGGAATTAAATGGCATTCACTATCCAGACTCAAATGGGGAGCGCCACTCCAGAGCAGAGTCAATTAGCGGCTCTAGCTTGGCCTCTGTAGGATTTGAACCATCTCTGTTGAATAGAATTGAGGGGAATTTTCCTGGAACCTACGGAACTAGTCATTACCAGCAAAATCGGCAGCCCGTGAACTCCAATGGGACAGCTGAATACCCAGATGTTAAAATGCCAAATGGTGTGATTCAAGCAAGCAGCCATAGCATGTCAGATACTGTTGATGGCCAGGATTCTGGGCCTTTTCAAGATGGCGAGAGTGGTTTGAGATCAAGGGATGCTGCACTGGCTGCTAATAGTAATCAAATTGAGGCAGAATGGATCGAACAGTATGAACCTGGTGTGTATATAACACTCATGGCCCTGCGGGATGGAACAAGAGATCTAAAACGAGTGCGCTTCAGCCGGAGAAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCAGAGAACCGCGAGAAGGTATATGAAAGATACAATGTTCGTAGCACAGAAAAATCTTCCAGCCAAGGAACTTGTAAGGCAGAGGGTGCTGCTTCACCTGTTTCCCAATCTTAG 3477 0.4487 MPALRPWATVTVLRTRFYKVRTQAIAEGGGVFVNFSHGMADLASYGNAHRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSSDESSLVWISSSGERSLKLSSVSRLIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSVQGGRSKIDGWTDGGLYLDDSRDLTSNRPSESSVSASQDISSPDISVSLNSNSSPKSFRLENTVNSERSHAPSDPTNMQVKGSSSDAFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVICENIVKVSADKNDSYFSPRTDVLLPRSLESNVVLDVHHIACGVRHAALVTRQGEIFTWGEESGGRLGHGVGKNVVQPRLVEALASTVVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDISHWIPKRIGGPLEGLQVSLVTCGPWHTALVTSTGQLFTFGDGTFGVLGHGSRENVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVPSLIDYNFHKIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPKSDGKLPCLVEDKLAGESVEEIACGSYHVSVLTSKNEVYTWGKGANGRLGHGDVEDRKIPTLIEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCHAKLNKVAEAGSNNRRNAMPRLSGENKDRLDKFEIRVSKPVIPSNLDLIKQLDSKAAKQGKKADTFALVRSSQAPSLLQLKDVVLSTAVDLRRTAPRPVLTPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKNITDSLKKTNELLNKEVLKLRSQVESLRQRCELQEVELQRSEKKTQEAMAVAAEESAKSKAAKEVIKSLTAQLKDLAERLPPGVNDSENIRPAYLPNGLELNGIHYPDSNGERHSRAESISGSSLASVGFEPSLLNRIEGNFPGTYGTSHYQQNRQPVNSNGTAEYPDVKMPNGVIQASSHSMSDTVDGQDSGPFQDGESGLRSRDAALAANSNQIEAEWIEQYEPGVYITLMALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYERYNVRSTEKSSSQGTCKAEGAASPVSQS 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1072 1158 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 96 935 - -
Glsi12g1072 1158 Pfam FYVE zinc finger 663 729 IPR000306 GO:0046872
Glsi12g1072 1158 PRINTS Chromosome condensation regulator RCC1 signature 446 460 IPR000408 -
Glsi12g1072 1158 PRINTS Chromosome condensation regulator RCC1 signature 606 627 IPR000408 -
Glsi12g1072 1158 PRINTS Chromosome condensation regulator RCC1 signature 389 405 IPR000408 -
Glsi12g1072 1158 PRINTS Chromosome condensation regulator RCC1 signature 548 566 IPR000408 -
Glsi12g1072 1158 PRINTS Chromosome condensation regulator RCC1 signature 339 355 IPR000408 -
Glsi12g1072 1158 PRINTS Chromosome condensation regulator RCC1 signature 430 446 IPR000408 -
Glsi12g1072 1158 MobiDBLite consensus disorder prediction 1005 1023 - -
Glsi12g1072 1158 Pfam Transcription factor regulating root and shoot growth via Pin3 1077 1132 IPR013591 -
Glsi12g1072 1158 SUPERFAMILY FYVE/PHD zinc finger 663 734 IPR011011 -
Glsi12g1072 1158 Pfam Regulator of chromosome condensation (RCC1) repeat 612 659 IPR000408 -
Glsi12g1072 1158 Pfam Regulator of chromosome condensation (RCC1) repeat 558 606 IPR000408 -
Glsi12g1072 1158 Pfam Regulator of chromosome condensation (RCC1) repeat 337 385 IPR000408 -
Glsi12g1072 1158 Pfam Regulator of chromosome condensation (RCC1) repeat 444 492 IPR000408 -
Glsi12g1072 1158 Pfam Regulator of chromosome condensation (RCC1) repeat 389 439 IPR000408 -
Glsi12g1072 1158 Pfam Regulator of chromosome condensation (RCC1) repeat 506 553 IPR000408 -
Glsi12g1072 1158 MobiDBLite consensus disorder prediction 1135 1158 - -
Glsi12g1072 1158 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 507 558 IPR000408 -
Glsi12g1072 1158 MobiDBLite consensus disorder prediction 185 268 - -
Glsi12g1072 1158 ProSiteProfiles BRX domain profile. 1078 1133 IPR013591 -
Glsi12g1072 1158 FunFam PH, RCC1 and FYVE domains-containing protein 1 497 668 - -
Glsi12g1072 1158 Coils Coil 870 904 - -
Glsi12g1072 1158 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 337 388 IPR000408 -
Glsi12g1072 1158 Gene3D - 222 499 IPR009091 -
Glsi12g1072 1158 Gene3D - 500 676 IPR009091 -
Glsi12g1072 1158 MobiDBLite consensus disorder prediction 824 841 - -
Glsi12g1072 1158 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 430 440 IPR000408 -
Glsi12g1072 1158 CDD PH_PLC_plant-like 50 162 - -
Glsi12g1072 1158 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 611 662 IPR000408 -
Glsi12g1072 1158 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 559 610 IPR000408 -
Glsi12g1072 1158 FunFam PH, RCC1 and FYVE domains-containing protein 1 246 496 - -
Glsi12g1072 1158 MobiDBLite consensus disorder prediction 1005 1062 - -
Glsi12g1072 1158 MobiDBLite consensus disorder prediction 190 267 - -
Glsi12g1072 1158 SUPERFAMILY RCC1/BLIP-II 274 664 IPR009091 -
Glsi12g1072 1158 Pfam Transcription factor BRX N-terminal domain 914 949 IPR027988 -
Glsi12g1072 1158 SUPERFAMILY PH domain-like 51 161 - -
Glsi12g1072 1158 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 482 492 IPR000408 -
Glsi12g1072 1158 Pfam Pleckstrin homology domain 53 161 IPR001849 -
Glsi12g1072 1158 Coils Coil 919 939 - -
Glsi12g1072 1158 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 444 495 IPR000408 -
Glsi12g1072 1158 MobiDBLite consensus disorder prediction 1035 1053 - -
Glsi12g1072 1158 Gene3D - 51 168 IPR011993 -
Glsi12g1072 1158 FunFam Putative E3 ubiquitin-protein ligase HERC1 669 737 - -
Glsi12g1072 1158 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 323 333 IPR000408 -
Glsi12g1072 1158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 677 735 IPR013083 -
Glsi12g1072 1158 MobiDBLite consensus disorder prediction 821 856 - -
Glsi12g1072 1158 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 389 443 IPR000408 -
Glsi12g1072 1158 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 667 729 IPR017455 -
Glsi12g1072 1158 SMART fyve_4 661 730 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1072 Glsi-ChrGlsi12 28505279 28513201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1072 1079 1149 Major Intrinsic Protein MIP AT1G31880 45.070 6.84e-14 72.8