Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1071 ATGGCAAGGGAGAAGTTATACGTCACCGTTCCGCCGAGCCTCTTCAGGTGCCCCATCTCGATGGACGTGATGAGGTCTCCGGTGAGCCTCTGCACTGGTGTCACCTACGACCGCTCCAGCATCCAGCACTGGCTCGACTCCGGCCACGACACCTGCCCCGCCACCATGCAAGTCCTCTCCTCCAAAGACATCATTCCCAACCTCACCCTCCACCGCCTCATCCACCTCTGGCACCGTTCCACGCACTCCTTATTGTCCTCACCGTCGACGACGTCAGACTCCTCTCCTTCCAAAATCTCAACCGAACAAGTAAGAACTCTGATCCGCAGAATTCAGGACGACAATGAAGATATCGCTGTTTCGCTTTCGAAGATCGTGGAATTCGTCGGTTATTCAGAAGAGAACCGGATTTTCTTGTCGAATTTCGCCGGTTTTGACTCGGTAATGATTCGTATTTTCAGCAGAAACTATTCTCAGATTAACGTTTTAGAAAAGGCGATAAAGATTTTCAGTTTGATTATGCAAGAAAATGGAGTAAAAGAACGAATTCGCGGGTTGATTTTCGATGCCAACCGGGATTGCTTATCTTCGATCGTATCCGTTTTGCAAAATGGTTCTGTAACCTCGAAGATTGAATCGGCTAAGGTTTTGGAATGGCTCGCCGGAGATGTTCCGTCGAAACGGTCAATCGCTGAAGCACAAGGCCTTTTGTCCGTACTGCTCGACCTACTACGCTCCGAAAACGATTCCAGAATATCTGAACTACACGACGCCGTTTTGTCATGCTTGGTTGCCGTTTCACTGACTCAGTCAACCAAAACCGAACTCGTCCGGTTGGGTCTCGTTCAGGTTCTCACCAAAAGACTACAGGACCCAACCTCTAGCAATTCAACCACCGAGAGGTCCATGAGATTATTGGCCATACTCTCGACGAGTGCGGAAGGGAGGCAGGCGATAATGGAAGAGCCGAGGTGCGTGGAGGCGGTGGTGGAGAGGGTGGTGAAGGCGTCTAAGGCGGCAACGGAAGACGCGGTGGTGGTGCTGTGGAATATGTGCTGTTTGTGTAGAAATGGAAAAGTGCAGGATGAGTTGGTGAAGAATAATGGGGTGACGAAGATATTGCTGGTCTTGCAGAGAGATTGCGAGGAGCATGTGAGGAGGAAGTGTGGGGATTTGGTTAAGGTTTTGAGGGCTGTGTCCAAGGATGGGTTGGGTAGCTATGAGACCAAAACTACCCATATCAAGCCTTGCTAA 1254 0.5032 MAREKLYVTVPPSLFRCPISMDVMRSPVSLCTGVTYDRSSIQHWLDSGHDTCPATMQVLSSKDIIPNLTLHRLIHLWHRSTHSLLSSPSTTSDSSPSKISTEQVRTLIRRIQDDNEDIAVSLSKIVEFVGYSEENRIFLSNFAGFDSVMIRIFSRNYSQINVLEKAIKIFSLIMQENGVKERIRGLIFDANRDCLSSIVSVLQNGSVTSKIESAKVLEWLAGDVPSKRSIAEAQGLLSVLLDLLRSENDSRISELHDAVLSCLVAVSLTQSTKTELVRLGLVQVLTKRLQDPTSSNSTTERSMRLLAILSTSAEGRQAIMEEPRCVEAVVERVVKASKAATEDAVVVLWNMCCLCRNGKVQDELVKNNGVTKILLVLQRDCEEHVRRKCGDLVKVLRAVSKDGLGSYETKTTHIKPC 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1071 417 SMART Ubox_2 14 77 IPR003613 GO:0004842|GO:0016567
Glsi12g1071 417 SUPERFAMILY RING/U-box 6 80 - -
Glsi12g1071 417 CDD RING-Ubox_PUB 12 63 IPR045210 -
Glsi12g1071 417 FunFam RING-type E3 ubiquitin transferase 11 82 - -
Glsi12g1071 417 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
Glsi12g1071 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 85 IPR013083 -
Glsi12g1071 417 SUPERFAMILY ARM repeat 192 398 IPR016024 -
Glsi12g1071 417 Gene3D - 91 403 IPR011989 -
Glsi12g1071 417 PANTHER WDSAM1 PROTEIN 11 401 IPR045185 GO:0061630
Glsi12g1071 417 ProSiteProfiles U-box domain profile. 10 84 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1071 Glsi-ChrGlsi12 28494906 28496159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1071 1 416 U-box Gene Family AT5G09800 42.857 2.85e-103 310