Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1068 ATGGATTTCATTGAAGGCGTAGGGGAGAGCTCCTCGCCACCGCGCACTTTGAGTGGTTTCAACAACTATGACGTGAGGAACGATGTGTACAATCGCCTCGTGGAAACCGGCCATGATCAAGCTGTGAGTAATCCGGAGTTTCGTGAACAGTTGGATGCTCACTTCAATCGCTTGCCTCCAAGTTACGGACTTGATGTTAACATGGATAGAGCCGAAGATGTTTTATTGCATCAGAGGCTTCTCGCTCTGGCAAAGGATCCAGAGAAGCGCCCCGTTTATCATATACGTTTCTTGGAGAATATTTCTACTAGAACAGATGGTGAAGATCAACAGATTGTAAGTACTCATTCTAACCCAAGGCCATCTTCTCATGCAACTAACGGGGAAGTTGTACCATCTCATAAGAGGACAAGAGATTGTGCAGCTCATTTTGAGCCTTGCTCTAAGCTTGAGGACCTAAATTTGGATGTCAGAAAGAACTCCAATGACATTGAGGAAAGATTTCTTGCTGACAACTTTTCCCAGAGCATTCCAATTCATGAAGTAATATTTACCTCTGTTGACAAGCCAAAGCTTCTAAGCCAGCTGTCTGCTTTGCTGTCTGATATTGGACTTAACATTCGTGAAGCACATGTTTTTTGCACAACTGATGGCTACTCCCTTGATGTATTTGTGGTGGATGGATGGCCAGTGGAGGAAACAGATGGTTTGTATGAGGCTATGGAAAGAGCTGTAGTGAGAAGTGAGGGGTCATGGTCTCGTTCTTTGAGTGCCCCTTTGTCTGTGGAGAAGGCCTTAGCTGCAGAATCAAAACCTGGAGATTGGGAAATAGACAGGAGGTTGTTGAAGATAGGAGAAAGAATAGCATCTGGATCTTGTGGAGATCTGTATCGTGGCATTTATCTTGGCCAAGATGTTGCTGTTAAGATTCTGAGATCTGAGCATTTGAATGACGCTTCAGGGGACGAGTTTGCTCAAGAAGTGGCAATTCTGAGGCAGGTGCATCATAAAAATGTTGTTTGTTTCATTGGTGCATGTACAAAGTCTCCGCATTTGAGCATAGTAACAGAGTATATGCCTGGAGGAAGTCTGTATGATTACTTGCATAAAAATCATAATGTCTTGGAGCTGTCTCAATTACTAAAGTTTGCAATTGATGTCTGCAAGGGTATGGAGTATTTGCATAAAAACAACATAATACACAGGGATTTGAAGACAGCCAATCTACTGATGGATACCGACAATGTTGTTAAAGTAGCAGATTTTGGAGTTGCTCGGTTCCTAAATCAGGGAGGAGTGATGACAGCAGAAACTGGAACATATAGATGGATGGCTCCAGAGGTTATAAACCATCAACCCTATGATCAGAAAGCAGATGTATTCAGTTTCTCCATAGTACTGTGGGAACTAGTGACAGCAAAGGTACCCTATGATACCATGACCCCCCTTCAAGCTGCCCTGGGCGTGAGACAGGGACTGCGCCCAGAACTTCCAGAGCACGGCCACCCTAAACTACTAGATCTGATGCAAAGATGTTGGGAAGAAATCCCAAGCAACAGGCCTGCCTTCTCTGAGATAACCGTTGAACTTGAAAATCTCCTGCAAGAAGTAGGGAATAATTCAGAAGCTAATGGTGCTTGA 1641 0.44 MDFIEGVGESSSPPRTLSGFNNYDVRNDVYNRLVETGHDQAVSNPEFREQLDAHFNRLPPSYGLDVNMDRAEDVLLHQRLLALAKDPEKRPVYHIRFLENISTRTDGEDQQIVSTHSNPRPSSHATNGEVVPSHKRTRDCAAHFEPCSKLEDLNLDVRKNSNDIEERFLADNFSQSIPIHEVIFTSVDKPKLLSQLSALLSDIGLNIREAHVFCTTDGYSLDVFVVDGWPVEETDGLYEAMERAVVRSEGSWSRSLSAPLSVEKALAAESKPGDWEIDRRLLKIGERIASGSCGDLYRGIYLGQDVAVKILRSEHLNDASGDEFAQEVAILRQVHHKNVVCFIGACTKSPHLSIVTEYMPGGSLYDYLHKNHNVLELSQLLKFAIDVCKGMEYLHKNNIIHRDLKTANLLMDTDNVVKVADFGVARFLNQGGVMTAETGTYRWMAPEVINHQPYDQKADVFSFSIVLWELVTAKVPYDTMTPLQAALGVRQGLRPELPEHGHPKLLDLMQRCWEEIPSNRPAFSEITVELENLLQEVGNNSEANGA 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1068 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 399 411 IPR008271 GO:0004672|GO:0006468
Glsi12g1068 546 MobiDBLite consensus disorder prediction 106 134 - -
Glsi12g1068 546 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 149 535 - -
Glsi12g1068 546 CDD STKc_MAP3K-like 288 530 - -
Glsi12g1068 546 Gene3D Phosphorylase Kinase; domain 1 272 359 - -
Glsi12g1068 546 ProSiteProfiles ACT domain profile. 181 255 IPR002912 -
Glsi12g1068 546 PRINTS Tyrosine kinase catalytic domain signature 393 411 IPR001245 GO:0004672|GO:0006468
Glsi12g1068 546 PRINTS Tyrosine kinase catalytic domain signature 439 449 IPR001245 GO:0004672|GO:0006468
Glsi12g1068 546 PRINTS Tyrosine kinase catalytic domain signature 458 480 IPR001245 GO:0004672|GO:0006468
Glsi12g1068 546 PRINTS Tyrosine kinase catalytic domain signature 356 369 IPR001245 GO:0004672|GO:0006468
Glsi12g1068 546 PRINTS Tyrosine kinase catalytic domain signature 501 523 IPR001245 GO:0004672|GO:0006468
Glsi12g1068 546 SMART serkin_6 282 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1068 546 MobiDBLite consensus disorder prediction 106 130 - -
Glsi12g1068 546 ProSiteProfiles Protein kinase domain profile. 282 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1068 546 SUPERFAMILY Protein kinase-like (PK-like) 273 533 IPR011009 -
Glsi12g1068 546 SUPERFAMILY ACT-like 180 244 IPR045865 -
Glsi12g1068 546 Pfam Protein tyrosine and serine/threonine kinase 282 529 IPR001245 GO:0004672|GO:0006468
Glsi12g1068 546 Gene3D Transferase(Phosphotransferase) domain 1 360 544 - -
Glsi12g1068 546 FunFam Serine/threonine-protein kinase isoform 1 272 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1068 Glsi-ChrGlsi12 28440496 28455283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1068 24 540 MAP Kinase Kinase Kinase AT4G35780 48.694 1.09e-175 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Glsi12g1068 PK_Tyr_Ser-Thr 8.3e-74 CL0016