Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1064 ATGCATTCCTTCCAAAGCAAGTACTTCTTCGTTTCACATTACTGGTACACATTCCACGCCTATGAAAGAACTTCAGCTTCCATCCCACTTCACACACCCTCTTCATTATCCTGTTCACACTCACAAACTTGTGCTTTGCAGAAGGGAACAATAGAGCACTCAGTGGAGACATCCCCACCTGTGGTTTCTAATGGTGGTTTGAAAGAAGATAATGGGATGAAGAGCAGAGAGATCGAGGAATATTGGGGTTACATCACAAACTGTGGAACTGAAGGCAACCTTCATGGAATTTTAGTAGGGAGAGAAGTGTTTCCAGATAGAGTTCTATATGCCTCCCAAGATTCACATTATTCTGTTTTCAAAGCTGCAAGAATGTATAGAATGAAGTGTGTCAAGGTTTCCACTTTGGTCACTGGTGAGATTGATTGTGCAGATTTTAAGTTCAAACTACTTGCTAACAAGCACAAGCCAGCCATCATCAACGTTAATATAGGAACAACTGGGAAAGGAGCAATTGACGACCTAGATCTAGTGATACAAACTCTTGAAGAAAGTGGCTTTACTCAGGATCGATTCTATATTCATTGCGATGAAGCATTATTTGGACTGATGGCGCCGAAAGTAACTTTTAAGAAGTCAATAGGAAGTGTAAGTGTTTCAGGGCATAAGTTTGTGGGGTGCCCTATTCCTTGTGGGATACAAATAACACGTTTAGAGCACATCAGTGCCCTATCAAGGAACGTAGAATATCTAGCTTCAAGGGATGCTACCATCATGGGAAGCAGGAATGGCCACGCCCCCATCTTTCTATGAGGCCTCAAGATGAGGAGTTTCGTTCCTAAGTGGCAGCTTGCTTGCCAAGGGAATATAGCACATGTAGTTGTGATGCCAAATGTTACAGATGAGAAGCTGAATGTCTTTGTGAGTGAGTTGGTTGTAAAAAGAAGTTGGCATGACGATGGGAAAGTTAAGCCTCCTTGTGTTGAAAGCGATGTATTGCCTTTGCCGCTCAACACTAACGAGCCCCTCCAAGAAGCAGATAAGCCGAAAGAGAATGGGCATTTGAGAGAAGTTGCGGGGACACTGAAGCAAACTTGGTTACCTACTCATCAAGACTTCAACTATGATGTATTGGGGCAGTTTCCGAATTTCCACATTAGGAATGCTGGTGATCCATTTCTTGGCAACGACAATGACCTCAACTCAACACCCATTGAGCTCTATGTTTTAGATTGGTTTTCCAGACTTTGGGAAATAGAGAAGAGTGAGTATTGGGGATATTTTACCACTGGTGGAACAGAAGGCAATCTTCATGGCATATTAGTAGAGTTAGCAATTCCTTGTGGTATTGTAAAAGCTCGTTCAAATGAATACATTGATGCCCTCTCTAGGGATGTTGAAATCATTGCTTCAAGAGATGCCACGATCACCGGAAGCCGAAATGGCACGGTGGTATTTGAGAGGCCTCTTGATGATGGGTTTGTTCGTAGGTGGAATTTTGCTTGCAAAGGGAATATAGTACATGTGGTGACGATGCAGCCTGTTACTACTAAAATGCTGGATGCTTTCGTGTTTGAATGTTCTAAACGGTCCATTTGGTACCAAGATGGTCACCGACGCCCTTCTTGCATTGCTCACGGAATTGGTGCCCAAAATTGTGCTTGCCCTTTGCGTGAAAAGGGAACGATGGAGCACATAGTGGAGACATCGCCACTTGTGGTTTCAAATGGTAGTTTCAAGAAAGATAAAAAGATGAAGAGCAGAGAGGTGGTGCCTATTTCTGACGATGACTTTCCTGGGGACAAGGAGGCTCACATGGCTAGTGTTCTTGCTCGCTACATGGAGACACTCGTTGAGAGAACCACCTACCATTTGGGTTACCCATTTAATTTGGACTTAGATTATGGTAGTGTGGGTCAGTTACAAGATTTCGTGATCAACAATCTAGGGGACCCCTTTATAGAAAGCAATTGTGGAGTACACTCGAGACCCTTTGAGGTTGGTGTGCTAGATTGGTTTGCACGTCTCTGGGAAATCGACGAGAATGAATATTGGGGTTACATCACAAACGGTGGAACTGAAGGCAACCTTCATGGAATTTTAGTAGGGAGAGAAGTGTTTCCAGATGGGGTTCTATATGCCTCCGAAGATTCACATTATTCTGTTTTCAAAGCGGCAAGAATGTGTAGAATGGAGTGTGTCAAGGTTTCCACTTTGGTGTCGGGTGAGATTGATTGTGCAGATTTTAAGTCCAAACTATTCGCCAACAAACAAAATCCAGCCATCGTCATCGTTAATATAGGAACAACTGTGAAAGGAGCAATTGATGACCTAGATCTAGTGATAAAAACTCTTCAAGAAAGTGGCTTTACTCATGATCGATTCTATATTCACTGTGATGGAGCATTATCTGGACTCATGGTCCCTTTTCTTAAAAGTGCACCAAAAGTAACTTTTAAGAAGCCAATAGGAAGTGTAAGTGTTTCAGGGCATAAGTTTGTGGGGTGTCCCTTTCCTTGTGGGGTACAAATAACACGTTTAGAGCACATCAATGTCTTTTCAAGGAACGTGGAATACATAGCTTCAAGAGATGCAACCATCACAGGAAGCAGGAATGGCCACGGCCCAATTTTTCTATGGTACGCGCTGAACAAGAAGGGTTACAAAGGGCTCCAAAAAGAGGTCCAAGAGTGCCTAAGAAATGCCCTTTACTTGAAGGGGTGCCTTAGGAAAGCTGGGATTAGTGTGATGCTGAATGACTTTAGCAACATCGTTGTGTTCGAGAGGCCTCAAGATGAGGAGTTCGTTCGGAAGTGGCAGCTTGCTTGCCAAGGGAATATAGCACATGTGATTGTGATGCCAAATGTTACGGTTCAGAAGCTGAATGACTTTGTGAATGAGGTGATTGCAAAACGGAGAAGCTGGTATCAGGATGGGAAAATTAAGCCTCCCTGTGTTGAAAGTGAAGTTGGTCTATGTTTGGACATCTCTCTCAGTACTCGTAGAACGGAGAATGCAGTGGTGAATAACACTTCAATGGCCTTCGTTCTTTTAGTCCTGGCCGGAGATAACCAGGTGTTGCCTTTACCGCTCAACACTAACAAGCCCCTCCAAGAAGCAGATGAGCAGATAGGGAATGGTCATTTGAGAGAAGTTACCATCTCTGATCAGTTCCATGGGGAAACTGAAGCAAACTGGGTTGACGATCGCTTAAGGGATAATGGCATCGGTGCCATGGTGAATGAGTTTAGCAGCAAGGTGGTGTTTGAGAGGCCTCTTGATGATGGGTTTGTTCATAGGTGGAATTTTTCTTGCAAAGGGAATATAGCACATGTGGTTACCCATTTAAGAGATAATAGGATAGGTGCCATGGTAAACGAGTTTAGCAGCACGGTGGTATTTGAGAGGCCTCTTGATGATGGGGTTCTTCGTAGGTGGAGTTTTGCTTGCAAAGGGAATATAGCACATGTGAAAGGAACGATGGAGCACATAGTGGAGACATCCCCACTTGTGGTTTCTAATGGTTCCCCACTTTCGGTTTCTAATGATAGTTCCACGAAAGATAAAGCGATGAAGAGCAGAGAGGTGGTGCCTATTTCTGACGATGACTTTCCTGGGGACAAGGAGGCTCATATGGCTAGTGTTCTTGCTCGCTACAGGGAGACACTCATTGAGAGAACCACCTACCATTTGGGTTACCCATTTAATTTGGACTTGGATTATGGTAGAGTGGCTCATTTACAAGATTTCGTGATCAACAATCTAGGGGACCCCTTTACAGAAAGCAATTGTGGAGTACACTCGAGACCCTTTGAGGTTGGTGTGCTAGATTGGTTTGCACGTCTCTGGGAAATCGACGAGAATGAATATTGGGGTTACATCACAAACGGTGGAACTGAAGGCAACCTTCATGGAATTTTAGTAGGGAGAGAAGTGTTTCCAGATGGGGTTCTATATGCCTCCGAAGATTCACATTATTCTGTTTTCAAAGCGGCAAGAATGTGTAGAATGGAGTGTGTCAAGGTTTCCACTTTGGTGTCGGGTGAGATTGATTGTGCAGATTTTAAGTCCAAACTATTCGCCAACAAACAAAATCCAGCCATCGTCATCGTTAATATAGGAACAACTGTGAAAGGAGCAATTGATGACCTAGATCTAGCACCAAAAGTAACTTTTAAGAAGCCAATAGGAAGTGTAAGTGTTTCAGGGCATAAGTTTGTGGGGTGTCCCTTTCCTTGTGGGGTACAAATAACACGTTTAGAGCACATCAATGTCTTGTCAAGGAACGTGGAATACATAGCTTCAAGAGATGCAACCATCACAGGAAGCAGGAATGGCCACGGCCCAATTTTTCTATGGTACGCACTGAACAAGAAGGGTTACAAAGGGCTCCAAAAAGAGGTCCAAGAGTGCCTAAGAAATGCCCTTTACTTGAAGGGTTGCCTTAGGAAAGCTGGGATTAGTGTGATGCTGAATGACTTTAGCAACATCGTTGTGTTCGAGAGGCCTCAAGATGAGGAGTTCGTTCGGAAGTGGCAGCTTGCTTGCCAAGGGAATATAGCACATGTGATTGTGATGCCAAATGTTACGGTTGAGAAGCTGAATGACTTTGTGAGTGAGTTGGTTGCAAAACGGAGAAGCTGGTATCAGGATGGGAAAATTAAGCCTCCCTGTGTTGAAAGTGAAGTTGGTAAGGCGAATTGTGCATGTAATATGCATGAGAATTGA 4728 0.4376 MHSFQSKYFFVSHYWYTFHAYERTSASIPLHTPSSLSCSHSQTCALQKGTIEHSVETSPPVVSNGGLKEDNGMKSREIEEYWGYITNCGTEGNLHGILVGREVFPDRVLYASQDSHYSVFKAARMYRMKCVKVSTLVTGEIDCADFKFKLLANKHKPAIINVNIGTTGKGAIDDLDLVIQTLEESGFTQDRFYIHCDEALFGLMAPKVTFKKSIGSVSVSGHKFVGCPIPCGIQITRLEHISALSRNVEYLASRDATIMGSRNGHAPIFLXGLKMRSFVPKWQLACQGNIAHVVVMPNVTDEKLNVFVSELVVKRSWHDDGKVKPPCVESDVLPLPLNTNEPLQEADKPKENGHLREVAGTLKQTWLPTHQDFNYDVLGQFPNFHIRNAGDPFLGNDNDLNSTPIELYVLDWFSRLWEIEKSEYWGYFTTGGTEGNLHGILVELAIPCGIVKARSNEYIDALSRDVEIIASRDATITGSRNGTVVFERPLDDGFVRRWNFACKGNIVHVVTMQPVTTKMLDAFVFECSKRSIWYQDGHRRPSCIAHGIGAQNCACPLREKGTMEHIVETSPLVVSNGSFKKDKKMKSREVVPISDDDFPGDKEAHMASVLARYMETLVERTTYHLGYPFNLDLDYGSVGQLQDFVINNLGDPFIESNCGVHSRPFEVGVLDWFARLWEIDENEYWGYITNGGTEGNLHGILVGREVFPDGVLYASEDSHYSVFKAARMCRMECVKVSTLVSGEIDCADFKSKLFANKQNPAIVIVNIGTTVKGAIDDLDLVIKTLQESGFTHDRFYIHCDGALSGLMVPFLKSAPKVTFKKPIGSVSVSGHKFVGCPFPCGVQITRLEHINVFSRNVEYIASRDATITGSRNGHGPIFLWYALNKKGYKGLQKEVQECLRNALYLKGCLRKAGISVMLNDFSNIVVFERPQDEEFVRKWQLACQGNIAHVIVMPNVTVQKLNDFVNEVIAKRRSWYQDGKIKPPCVESEVGLCLDISLSTRRTENAVVNNTSMAFVLLVLAGDNQVLPLPLNTNKPLQEADEQIGNGHLREVTISDQFHGETEANWVDDRLRDNGIGAMVNEFSSKVVFERPLDDGFVHRWNFSCKGNIAHVVTHLRDNRIGAMVNEFSSTVVFERPLDDGVLRRWSFACKGNIAHVKGTMEHIVETSPLVVSNGSPLSVSNDSSTKDKAMKSREVVPISDDDFPGDKEAHMASVLARYRETLIERTTYHLGYPFNLDLDYGRVAHLQDFVINNLGDPFTESNCGVHSRPFEVGVLDWFARLWEIDENEYWGYITNGGTEGNLHGILVGREVFPDGVLYASEDSHYSVFKAARMCRMECVKVSTLVSGEIDCADFKSKLFANKQNPAIVIVNIGTTVKGAIDDLDLAPKVTFKKPIGSVSVSGHKFVGCPFPCGVQITRLEHINVLSRNVEYIASRDATITGSRNGHGPIFLWYALNKKGYKGLQKEVQECLRNALYLKGCLRKAGISVMLNDFSNIVVFERPQDEEFVRKWQLACQGNIAHVIVMPNVTVEKLNDFVSELVAKRRSWYQDGKIKPPCVESEVGKANCACNMHEN 1575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1064 1575 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 1398 1419 IPR021115 GO:0016831
Glsi12g1064 1575 Gene3D - 70 272 IPR015421 GO:0003824
Glsi12g1064 1575 Gene3D - 1390 1482 IPR015421 GO:0003824
Glsi12g1064 1575 Gene3D - 393 478 IPR015421 GO:0003824
Glsi12g1064 1575 Gene3D - 1244 1389 IPR015421 GO:0003824
Glsi12g1064 1575 SUPERFAMILY PLP-dependent transferases 1207 1544 IPR015424 -
Glsi12g1064 1575 PANTHER - 483 558 - -
Glsi12g1064 1575 SUPERFAMILY PLP-dependent transferases 594 970 IPR015424 -
Glsi12g1064 1575 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 216 237 IPR021115 GO:0016831
Glsi12g1064 1575 Gene3D - 657 872 IPR015421 GO:0003824
Glsi12g1064 1575 SUPERFAMILY PLP-dependent transferases 396 442 IPR015424 -
Glsi12g1064 1575 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 825 846 IPR021115 GO:0016831
Glsi12g1064 1575 SUPERFAMILY PLP-dependent transferases 71 289 IPR015424 -
Glsi12g1064 1575 Gene3D Aspartate Aminotransferase, domain 1 874 972 IPR015422 GO:0003824
Glsi12g1064 1575 Pfam Pyridoxal-dependent decarboxylase conserved domain 107 256 IPR002129 GO:0016830|GO:0019752|GO:0030170
Glsi12g1064 1575 Pfam Pyridoxal-dependent decarboxylase conserved domain 1316 1385 IPR002129 GO:0016830|GO:0019752|GO:0030170
Glsi12g1064 1575 Pfam Pyridoxal-dependent decarboxylase conserved domain 710 914 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1064 Glsi-ChrGlsi12 28378695 28402934 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1064 758 928 Calmodulin-binding Proteins AT3G17760 25.641 6.19e-06 48.9