LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g1059	ATGGAGCCTAAGTTCATAGGGAAGACGCCGCCCACGGTGGACATTGGGCAGGTGTCCGACTTCCCACAACGTGGGTCCCACCACCGCAGGTCCCACTCCGACACTACCTTCCGTCTCGCCAACTTCGATGACTTGCTCCAATTCGACCCTTTTGACTTCGACATCTCCAACTTCCCATCTCCGCTGCCCAACGCTGCTGCCGGACAGGGCGAGCCCATGGCTGTTGACTCGTCCTCGGAGGAATCGAACGGCCGGAATTCTAGGCCCAGGGCGGTGGGGCCCCCCATCGGTCATCTCCGGAGCTTGTCTGTTGACTCTGATTTCTTCGATGGCATGGGATTGATCGGCGGCGGCGGCGAGAATTTTGGCCTGAAAGATGTTGGGGAGAAGCCGATGGTTCATCACCGGCATAGCATTTCCATGGATGGGTCAACGAACGTGTCTTTTGAGGCTGACCCGTCCATGGGGATTGACGGGATGAAGAAGGCCATGAACCCTGAGAAGCTCGCTGAACTTGCTCTTGTTGATCCCAAGAGAGCTAAGAGGATTCTTGCTAATAGGCAATCTGCTGCTCGATCAAAGGAGAGGAAAACCCGGTATACAAATGAGCTAGAAAAAAGGGTGCAGACACTTCAGACTGAAGCAACTAACCTCTCTGCTCAGCTTACCCTGCTTCAGAGAGACACTACAGGATTGACTACTGAGAACAGGGAGCTCAAATTGCGGTTAGATGCTATGCAACAACAAGCACGGCTTAGAGATGCTCTGAATGAATCATTGAAGGAAGAACTACAGCGCCTCAAGATACAAACTAGCCAGATTGCTGCTGTTAATGGCAGCCCTTCTTTTGCTGGGCTGCTCTCTCAATTTGCTTCTCAGTTAGCCCTGCACCAGTTGGCTGGTCCTCCACCCCAGCAGGCTCAACAGGAACCCCAGCTTGGCATGCCTTCATCATGCTCTGATCAGCCTTTCCACGAGCAGCCTCGCCCTGACTTCTCGAAATTCAATCAGAGGAACTAG	1020	0.5343	MEPKFIGKTPPTVDIGQVSDFPQRGSHHRRSHSDTTFRLANFDDLLQFDPFDFDISNFPSPLPNAAAGQGEPMAVDSSSEESNGRNSRPRAVGPPIGHLRSLSVDSDFFDGMGLIGGGGENFGLKDVGEKPMVHHRHSISMDGSTNVSFEADPSMGIDGMKKAMNPEKLAELALVDPKRAKRILANRQSAARSKERKTRYTNELEKRVQTLQTEATNLSAQLTLLQRDTTGLTTENRELKLRLDAMQQQARLRDALNESLKEELQRLKIQTSQIAAVNGSPSFAGLLSQFASQLALHQLAGPPPQQAQQEPQLGMPSSCSDQPFHEQPRPDFSKFNQRN	339

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g1059	339	Coils	Coil	201	228	-	-
	Glsi12g1059	339	Gene3D	-	177	231	-	-
	Glsi12g1059	339	MobiDBLite	consensus disorder prediction	300	339	-	-
	Glsi12g1059	339	Coils	Coil	246	266	-	-
	Glsi12g1059	339	FunFam	probable transcription factor PosF21	177	230	-	-
	Glsi12g1059	339	SMART	brlzneu	174	238	IPR004827	GO:0003700\|GO:0006355
	Glsi12g1059	339	SUPERFAMILY	Leucine zipper domain	178	230	IPR046347	GO:0003700\|GO:0006355
	Glsi12g1059	339	Pfam	bZIP transcription factor	178	235	IPR004827	GO:0003700\|GO:0006355
	Glsi12g1059	339	PANTHER	TRANSCRIPTION FACTOR POSF21-RELATED	21	311	-	-
	Glsi12g1059	339	MobiDBLite	consensus disorder prediction	302	324	-	-
	Glsi12g1059	339	MobiDBLite	consensus disorder prediction	1	33	-	-
	Glsi12g1059	339	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	176	239	IPR004827	GO:0003700\|GO:0006355
	Glsi12g1059	339	CDD	bZIP_plant_RF2	179	228	IPR044759	GO:0003700\|GO:0006355
	Glsi12g1059	339	MobiDBLite	consensus disorder prediction	62	97	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g1059	Glsi-ChrGlsi12	28328845	28332112	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g1059	7	317	bZIP Transcription Factor Family	AT1G43700	47.463	1.86e-73	229

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Glsi12g1059		bZIP_1	5e-08	CL0018