Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1047 ATGTTAGGGTTAGACTCGTCATTTCCCCCACTGAAATCCAAAGACTCCCAAAAGGAAAAGCAAGCAAAGCTCATCTTCTTCTTCATCCTTCGAAAAATAGAGACAAGAGAGGGGGAGAGAGAGAGAGAGAGAGAGAGTCCTATGCTGGGGGGCTCATCAGCTGTGTTGGGAGGAGGAGGAGGAGGTGGTGATGCAGTGGCAACGGTGGCCTCTGCCGCTGCATCGGGCGTGCCAGCTGGCGATGGCGAGTCGGTGGCTGCGGCTGCTGGATCAAATTCAGGTGAGGATATTGATAGAGGTAAAGGGGAAGAGGGTGACCGGAGCTTCGGTGGCAACCGGTGGCCTCGCCAGGAGACTTTGGCTCTCTTGAAGATACGCCAAGATATGGACGTGGCGTTTCGAGATGCCAGCGTTAAGGGTCCTCTTTGGGAAGATGTTTCCCGGAAGCTGGCAGAGCTTGGGTACCACAGAAGCGCGAAGAAATGCAAAGAGAAATTCGAGAACGTCTACAAGTACCACAGGAGAACAAAGGAAGGCCGAAGTGGCAAATCAGAAGGCAAAACCTATCGCTTCTTCGAACAAATAGAAGCTCTCGAAAACCACCCTCCAACTCAACAGTCCAAACCCCAACAACCACCAGCACTACCACCGTCAAAGCCACAATTAGCAGCAGCAATACCCGCAACCCCAGTATCAGTAGTAACTAGCACTTCGCCCATCCCAATGCCGCCACCTCCACCCCAAGTACCTCCCACTCTTCCTCACGTCACTGTTCCATCCACAATTACACTCCCTACGATAAACCTTACCGTTCCTCCATACAATAATCCCACAAACATCCCATCTTTTTTTTCATCCGATCCGATGTTTTCCAATTCTAGTTCTTCTTCCACTTCTTCCGACGAGACAACGTTGGAGAGGCAGCGGAAGCGGAAGAGGAAATGGAAGGACTTCTTCGAGAGGCTGATGAAGGAAGTGATAGAGAAGCAGGAGGAGTTGCAGAAGAGATTCTTGGAAGCCATAGAAAAAAGGGAGCACGAGAGAATGGTAAGGGAAGAAGCTTGGAGAATGCAGGAGATGGCCAGGATTACTAGAGAGCGGGAGATTTTGGCTCAGGAAAGATCTATAGCCGCCGCTAAAGATGCTGCTGTAATGGCATTTCTTCAGAAGATCGCTGAACAGCAGAATCTTAATATCCCTCAGCCGCCGCCACAACCAACGGCGCCACCTCCTCCTCCGCCTCCACCTGCTCCGCCACAGCCTCAGGCGGCGATCCCACAACAACAGGTAACGAATATGGAAATTACAGAAAATGAAAATAATAATAATAATAATATGATGGGTCAAGGCTCTTCGAGGTGGCCAAAAGTGGAGGTTCAGGCATTGATAAAGCTACGAACAAACATGGATGCGAAGTACCAAGAGAATGGGCCAAAGGGGCCTTTGTGGGAGGAGATTTCAGCGGCAATGAGGAAGCTCGGGTATAACCGGAACGCGAAAAGGTGCAAGGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTTAAGGAAAGCAACAAGAGGAGGCCAGAAGATTCCAAGACATGTCCATACTTTCACCAGTTGGATGCTCTATATAGGGAGAAGAATTCGAGCAAGGTCGAGAATATTTCTGTAGAGAACCATAATAATAACATGAATATGGCGCCGCTTATGGTGCGGCCGGAGCAGCAATGGCCGCCTCAGCAGGACACGAGGATGGAAGAGGCGGAGAATGAGCCAGTAATGGAAGATGAAGAAGACGATGAAGATAAGGATATGGGAGAGGAAGAGGAAGATGAAGAGGAGGAAGGAGGTGGTAACTACGAGATAGTGGCGAGCAAGCCAGCTTCAGTGAGTGCAGCTGAGAGAGTGAATGAGTGA 1905 0.4982 MLGLDSSFPPLKSKDSQKEKQAKLIFFFILRKIETREGERERERESPMLGGSSAVLGGGGGGGDAVATVASAAASGVPAGDGESVAAAAGSNSGEDIDRGKGEEGDRSFGGNRWPRQETLALLKIRQDMDVAFRDASVKGPLWEDVSRKLAELGYHRSAKKCKEKFENVYKYHRRTKEGRSGKSEGKTYRFFEQIEALENHPPTQQSKPQQPPALPPSKPQLAAAIPATPVSVVTSTSPIPMPPPPPQVPPTLPHVTVPSTITLPTINLTVPPYNNPTNIPSFFSSDPMFSNSSSSSTSSDETTLERQRKRKRKWKDFFERLMKEVIEKQEELQKRFLEAIEKREHERMVREEAWRMQEMARITREREILAQERSIAAAKDAAVMAFLQKIAEQQNLNIPQPPPQPTAPPPPPPPPAPPQPQAAIPQQQVTNMEITENENNNNNNMMGQGSSRWPKVEVQALIKLRTNMDAKYQENGPKGPLWEEISAAMRKLGYNRNAKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDALYREKNSSKVENISVENHNNNMNMAPLMVRPEQQWPPQQDTRMEEAENEPVMEDEEDDEDKDMGEEEEDEEEEGGGNYEIVASKPASVSAAERVNE 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1047 634 ProSiteProfiles Myb-like domain profile. 112 170 IPR001005 -
Glsi12g1047 634 MobiDBLite consensus disorder prediction 585 614 - -
Glsi12g1047 634 MobiDBLite consensus disorder prediction 202 221 - -
Glsi12g1047 634 MobiDBLite consensus disorder prediction 77 113 - -
Glsi12g1047 634 MobiDBLite consensus disorder prediction 206 220 - -
Glsi12g1047 634 CDD GT1 112 177 - -
Glsi12g1047 634 SMART sant 110 172 IPR001005 -
Glsi12g1047 634 SMART sant 450 512 IPR001005 -
Glsi12g1047 634 MobiDBLite consensus disorder prediction 571 634 - -
Glsi12g1047 634 MobiDBLite consensus disorder prediction 285 311 - -
Glsi12g1047 634 MobiDBLite consensus disorder prediction 397 426 - -
Glsi12g1047 634 ProSiteProfiles Myb-like domain profile. 452 510 IPR001005 -
Glsi12g1047 634 MobiDBLite consensus disorder prediction 96 111 - -
Glsi12g1047 634 FunFam Trihelix transcription factor GT-2 114 175 - -
Glsi12g1047 634 PANTHER FI21293P1 81 595 - -
Glsi12g1047 634 FunFam Trihelix transcription factor GT-2 454 515 - -
Glsi12g1047 634 CDD GT1 452 517 - -
Glsi12g1047 634 MobiDBLite consensus disorder prediction 285 302 - -
Glsi12g1047 634 MobiDBLite consensus disorder prediction 36 62 - -
Glsi12g1047 634 Pfam Myb/SANT-like DNA-binding domain 112 198 IPR044822 -
Glsi12g1047 634 Pfam Myb/SANT-like DNA-binding domain 452 539 IPR044822 -
Glsi12g1047 634 MobiDBLite consensus disorder prediction 399 423 - -
Glsi12g1047 634 Gene3D - 114 175 - -
Glsi12g1047 634 Gene3D - 454 515 - -
Glsi12g1047 634 Coils Coil 316 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1047 Glsi-ChrGlsi12 28243276 28246596 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1047 103 573 Trihelix Transcription Factor Family AT1G76880 56.375 6.18e-171 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Glsi12g1047 Myb_DNA-bind_4 5e-22 CL0123