Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1045 ATGGATAATCCAAACATGGCCAGGATGGAAAGTGTTATTTTTGTTCTTTCCAATTATCTAATTGATGTAAATGAAAGCATTGCATTCCCTATCCCCGTGAGTGAATACATGGGTGAATATCCATTAAAGGGCACATTCACATTCACATGCCCTCCATCTCAGGAAAACTTTAACTGTGTAAAGGGCCAAAGCAAGGCATATCAGACACCTATAGTTGTGCCACGTAATTCGCCAGGGAAGGAGGCACCTCTAGCTAGCTATATGCAGCTTGGAGACCCAAGTACTGTATTAGAGACCTCCTCCGAGCTTGGTTATCACAGAAGCGCAAAGAAGTGCAAGGAAAAATTTGAGAATGTGTACAAGTACCACAAGAGAACCAAAGAGAGCAGAAGTGGCAAACCAGAAGGAAAGATAAAAACCTATAGGTTTTTTGATCAATTACAAGCCCTTGAAACCCGATTTACACTCTCTCATCACCCACCAAAACCACAACCATTGACGACAATGCCATTCCAAACAAGGCCTAGTGATTCCTCAACTATCTCTTATCTCACCACCACCACCACTACTCTTCCATCCCCAATCCCACCAACCAATGCTTCTATTAACCCTAGAATTCCATCATCCCAAGGTGCTGTCCCATTAAACATGAATCTTTTCTCCACCACCACTACCATTACCAACTCCTCCACCTCTTCTTCCACTGCCTCTGACGAAGATTTGGAAGAAAGGTACAGGAAGAAAAGAAAATGGAAGGACTACTTCAGGAAACTCACGAGACATGTCTTGGCCAGGCAAGAGGAAATGCACAGGAGGTTCTTGGAAGCCATAGACAAAAGAGAGCACGAAAGGGTGGCTCAACAAGAAGCTTGGAGGATGCAAGAAATGGTGAGGATCAATAGAGAACATGAGATTCTTGTCCAAGAAAGATCAACCGCAGCTGCTAAGGATGCTGCTGTTATTTCATTCTTGCAAAAGTTGTCTAGTAATAATAATAATTTCCTCCAACAACCACCTCCACCGCCGCCCCCACCACCACAACCGGTGTCGCAGGTACAACAACCACAACCTCAGCAACAGCAAACTCAGGAGCTGACAGTACATCCAACGTTGAACAAAAATAATGGGAACAATCACAATAATAATAATAATGTTTCTGGGAGCTCTTCGTCTAGGTGGCCACAGGCGGAAGTTCATGCTTTGATAAGGCTGAGAACGAGTCTTGAAGCTAAGTATCAAGATAATGGGGCGAAAGCTCCAATGTGGGAGGAGATATCAGGTGGAATGAAGAGGCTTGGGTATGAAAGGAGTGCAAAGAGATGCAAGGAGAAATGGGAGAATATTAACAAGTATTTTAAGAAGATGAAGGAAAGTAACAAGCAAAGGCGTGAAGATAGCAAGACATGTCCTTACTTCGATGAGCTCGAAGCTTTGTACAAGGAAAAGAGCAAAATCCAGAATCCCTTTGGTTCAATGTTTCATAATATGAAGGCAAATGAGATGATGGAACCATTGATGGTGCAGCCGGAGCAGCAATGGAGGCCTCCTCCTCAGCAAATGGAAGAGGGAATGGAAGATGAAGAAGATGGTGATGTTGAAGAAGAAGAAGGAGGAGGTTATGAGATTGGGACAAATAAACTTCCTTCGGTGGACACAGTTGAATGA 1665 0.436 MDNPNMARMESVIFVLSNYLIDVNESIAFPIPVSEYMGEYPLKGTFTFTCPPSQENFNCVKGQSKAYQTPIVVPRNSPGKEAPLASYMQLGDPSTVLETSSELGYHRSAKKCKEKFENVYKYHKRTKESRSGKPEGKIKTYRFFDQLQALETRFTLSHHPPKPQPLTTMPFQTRPSDSSTISYLTTTTTTLPSPIPPTNASINPRIPSSQGAVPLNMNLFSTTTTITNSSTSSSTASDEDLEERYRKKRKWKDYFRKLTRHVLARQEEMHRRFLEAIDKREHERVAQQEAWRMQEMVRINREHEILVQERSTAAAKDAAVISFLQKLSSNNNNFLQQPPPPPPPPPQPVSQVQQPQPQQQQTQELTVHPTLNKNNGNNHNNNNNVSGSSSSRWPQAEVHALIRLRTSLEAKYQDNGAKAPMWEEISGGMKRLGYERSAKRCKEKWENINKYFKKMKESNKQRREDSKTCPYFDELEALYKEKSKIQNPFGSMFHNMKANEMMEPLMVQPEQQWRPPPQQMEEGMEDEEDGDVEEEEGGGYEIGTNKLPSVDTVE 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1045 554 MobiDBLite consensus disorder prediction 508 554 - -
Glsi12g1045 554 PANTHER FI21293P1 100 529 - -
Glsi12g1045 554 Pfam Myb/SANT-like DNA-binding domain 391 478 IPR044822 -
Glsi12g1045 554 Pfam Myb/SANT-like DNA-binding domain 99 149 IPR044822 -
Glsi12g1045 554 MobiDBLite consensus disorder prediction 522 538 - -
Glsi12g1045 554 Gene3D - 94 125 - -
Glsi12g1045 554 Gene3D - 393 454 - -
Glsi12g1045 554 FunFam Trihelix transcription factor GT-2 393 454 - -
Glsi12g1045 554 MobiDBLite consensus disorder prediction 156 178 - -
Glsi12g1045 554 ProSiteProfiles Myb-like domain profile. 391 449 IPR001005 -
Glsi12g1045 554 MobiDBLite consensus disorder prediction 335 352 - -
Glsi12g1045 554 CDD GT1 392 456 - -
Glsi12g1045 554 MobiDBLite consensus disorder prediction 330 393 - -
Glsi12g1045 554 MobiDBLite consensus disorder prediction 353 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1045 Glsi-ChrGlsi12 28225533 28233158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1045 102 512 Trihelix Transcription Factor Family AT1G76890 48.018 1.50e-108 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Glsi12g1045 Myb_DNA-bind_4 2.2e-21 CL0123