Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1043 ATGTCCTTTCTTGTTTGTTCGTGCTTGCTTGTGCGTGTGACAGACCTTCATCCTAGCCCTGACCACGTTCTTCACGGACCTCAAACTTGTGACACTAAAAAAACTAGAGTGGAATATTTATCTTTAAGCAACGTTGATGACATATTAAGTTCTGGGGCTGTCAGTGTATTGGAGCAAATGTCCTTCCGCAGCATACTTCGTGATGTAAGGGATGGATTTGGAAGCTTATCAAGACGGAGTTTTGAGGTAAGGCTTCTCGGGCATAATAGAGGGAAGTCACATAGCTCAGTGCATGAGTTGCAGGAACAGCCTCCAGTTATACAGAACAGCCGTTGGGCTAGCCTTCCACCTGAGCTTCTTCGTGATGTTATCAAAAGATTGGAAGCAAGTGAGAGTACATGGCCTGCTCGTAAGCATGTAGTTGCTTGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTAGCAAAATTGAGTTCTCTGGGAAGATTACTTTCCCTCTTTCCCTAAAACAGCCTGGATTTAGGGACGGAACCATCCAGTGTTTCATCAAGAGGGACAAATCTAATTTGACATACCGTCTTTTCCTTTGCCTTAGCCCTGCATTACTTGTTGAAAATGGAAAATTTCTTCTATCTGCAAAAAGGACTAGAAGAACTACGTGCACAGAGTATATCATATCCATGGATGCAGATAACATATCAAGATCTAGTAGTACATACATTGGAAAACTGAGGTCGAATTTTCTTGGCACCAAATTTATAATTTATGATACACAGCCTCCCTATAATAATTCTCAGCTGTCTCCACCGGGTCGAAGCCGTAGGTTCTATTCAAAAAAGGTTTCTCCAAAGGTCCCTAGTGGCAGCTACAATATTGCCCAAGTAACCTATGAGCTGAATGTGCTGGGTACTAGGGGACCTCGCAGGATGCACTGCATGATGTACTCAATCCCTTCATTGGCTCTTGAGCCTGGTGGCACTGTCCCAGGCCAACCAGAGCTCCTTCCCCGCTCCCTTGAGGACTCATTCCGGAGTATATCCTTCTCAAAATCCATTGACAATTCAATTGAGTTTAGCAGCTCTAGGTTCTCAGACATAATCAGTACTGGCAATGAAGAGGAGGAAGGAAAGGGGAGACCACTAATTCTTAAGAACAAGGCCCCAAGATGGCATGAGCAGCTGCAATGTTGGTGCCTAAATTTCCGGGGGAGGGTGACTGTTGCCTCTGTCAAAAATTTTCAGCTGATTGCTGCAACACAGCCTGCAGCCGGTGCTCCAACACCGGCACAACCAACACAGTCTGATCATGACAAGATTATTCTTCAGTTTGGCAAGGTCGGCAAGGATATGTTTACAATGGATTATCGATATCCCCTATCAGCATTTCAGGCTTTTGCCATATGCTTGACTAGCTTTGACACAAAACTGGCTTGTGAATAG 1452 0.4463 MSFLVCSCLLVRVTDLHPSPDHVLHGPQTCDTKKTRVEYLSLSNVDDILSSGAVSVLEQMSFRSILRDVRDGFGSLSRRSFEVRLLGHNRGKSHSSVHELQEQPPVIQNSRWASLPPELLRDVIKRLEASESTWPARKHVVACAAVCKSWREMCKEIVSKIEFSGKITFPLSLKQPGFRDGTIQCFIKRDKSNLTYRLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNSQLSPPGRSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMHCMMYSIPSLALEPGGTVPGQPELLPRSLEDSFRSISFSKSIDNSIEFSSSRFSDIISTGNEEEEGKGRPLILKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPAQPTQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1043 483 PRINTS Tubby superfamily signature 244 268 IPR000007 -
Glsi12g1043 483 PRINTS Tubby superfamily signature 293 320 IPR000007 -
Glsi12g1043 483 PRINTS Tubby superfamily signature 387 404 IPR000007 -
Glsi12g1043 483 PRINTS Tubby superfamily signature 405 421 IPR000007 -
Glsi12g1043 483 PRINTS Tubby superfamily signature 228 244 IPR000007 -
Glsi12g1043 483 PRINTS Tubby superfamily signature 440 459 IPR000007 -
Glsi12g1043 483 PRINTS Tubby superfamily signature 461 483 IPR000007 -
Glsi12g1043 483 FunFam Tubby-like F-box protein 107 160 - -
Glsi12g1043 483 ProSitePatterns Tub family signature 1. 405 418 IPR018066 -
Glsi12g1043 483 Gene3D Tubby Protein; Chain A 171 483 IPR025659 -
Glsi12g1043 483 Pfam F-box domain 112 160 IPR001810 GO:0005515
Glsi12g1043 483 PANTHER TUBBY-RELATED 93 481 - -
Glsi12g1043 483 FunFam Tubby-like F-box protein 169 483 - -
Glsi12g1043 483 SUPERFAMILY Tubby C-terminal domain-like 162 483 IPR025659 -
Glsi12g1043 483 Gene3D - 107 158 - -
Glsi12g1043 483 SUPERFAMILY F-box domain 104 156 IPR036047 GO:0005515
Glsi12g1043 483 ProSitePatterns Tub family signature 2. 468 483 IPR018066 -
Glsi12g1043 483 CDD F-box_AtTLP-like 112 156 - -
Glsi12g1043 483 Pfam Tub family 173 478 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1043 Glsi-ChrGlsi12 28198480 28202061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1043 60 483 TUB Transcription Factor Family AT1G76900 69.499 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Glsi12g1043 Tub 5.2e-115 CL0395