Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1022 ATGGGATTTATCGTGGATACCACTTCGCCGCCGGAGCAATCTCAGAAGGAGGGAGGAAGGATGTCGCACAGGAAGTTCGAACACCCAAGGCACGGATCACTGGGATTTCTCCCCAGGAAACGGGCTGCTCGTCACAGGGGAAAAGTGAAGGCATTCCCCAAGGATGACCCAACCAAAGAACCCAGGCTTACTGCCTTCTTGGGTTACAAGGCAGGCATGACTCACATTGTTAGAGAAGTCGAGAAACCAGGATCAAAACTTCACAAGAAGGAAACTTGTGAACCTGTTACAATTATTGAGACCCCTCCGATGGTTATTGTTGGGGTTGTGGGTTATGTGAAAACACCCCGTGGTCTTCGAACATTGAATACTGTTTGGGCTCAGCATTTGAGTGAGGAAGTGAAGCGCAGATTCTACAAGAACTGGTGTAAGTCCAAGAAGAAGGCTTTCGCAAAGTACTCAAAGCAGTTTGAATCTGAAGAAGGGAAGAAAAACATTCAGGCACAGCTTGAGAAAATCAAGAAGTATGCAACTGTTGTCCGGGTTTTGGCTCACACCCAGATTAGAAAAATGAAAGGGCTGAAGCAGAAGAAAGCTCACCTCATGGAGATTCAGGTCAATGGTGGCACTATTGCACAGAAGGTGGACTATGCATACAATTTCTTTGAGAAGCAGGTTCCTATTGATGCTGTATTCCAGAAGGATGAGATGATTGACCTCATTGGTGTGACAAAGGGTAAAGGTTATGAAGGTGTTGTCACTCGTTGGGGTGTTACCCGCCTTCCCCGCAAGACTCACAGGGGGCTGAGGAAGGTGGCTTGTATTGGTGCCTGGCATCCTGCCAGAGTTTCTTTCACAGTTGCCAGAGCTGGTCAGAATGGATACCATCACCGAACTGAGATGAACAAGAAGATTTATAGGCTTGGCAAAGCTGGGCAGGAGACACACACGGCTCTTACCGAGTTTGACAGGACTGAGAAAGATATAACACCAATGGGTGGTTTTCCTCACTACGGTATTGTGAAGGATGATTATGTGATGGTCAAGGGATGCTGTGTTGGACCCAAGAAAAGGGTTATTACATTGCGCCAATCCCTGCTTAAGCAGACTTCTCGCCTTGCTCTGGAGGAGATCAAGCTCAAGTTTATTGACACATCTTCAAAGTTTGGGCATGGCCGCTTCCAGACAACGCAGGAGAAGCAAAAGTTCTATGGACGTCTCAAGGCATAA 1230 0.4732 MGFIVDTTSPPEQSQKEGGRMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKEPRLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWAQHLSEEVKRRFYKNWCKSKKKAFAKYSKQFESEEGKKNIQAQLEKIKKYATVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAQKVDYAYNFFEKQVPIDAVFQKDEMIDLIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYRLGKAGQETHTALTEFDRTEKDITPMGGFPHYGIVKDDYVMVKGCCVGPKKRVITLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1022 409 Gene3D Translation factors 64 405 - -
Glsi12g1022 409 FunFam 60S ribosomal protein L3 21 94 - -
Glsi12g1022 409 Gene3D Ribosomal protein L3, domain 3 21 294 IPR044892 -
Glsi12g1022 409 FunFam 60S ribosomal protein L3 246 294 - -
Glsi12g1022 409 Pfam Ribosomal protein L3 21 390 IPR000597 GO:0003735|GO:0005840|GO:0006412
Glsi12g1022 409 SUPERFAMILY Translation proteins 24 390 IPR009000 -
Glsi12g1022 409 ProSitePatterns Ribosomal protein L3 signature. 232 255 IPR019926 -
Glsi12g1022 409 Gene3D - 103 227 - -
Glsi12g1022 409 FunFam 60S ribosomal protein L3 64 159 - -
Glsi12g1022 409 FunFam 60S ribosomal protein L3 103 227 - -
Glsi12g1022 409 MobiDBLite consensus disorder prediction 17 34 - -
Glsi12g1022 409 MobiDBLite consensus disorder prediction 1 57 - -
Glsi12g1022 409 FunFam Ribosomal protein L3 285 409 - -
Glsi12g1022 409 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 21 404 IPR045077 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1022 Glsi-ChrGlsi12 28032284 28038350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1022 21 407 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 87.080 0.0 701