Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1019 ATGTGCTTGCTAACGGTGGCGCACCAACGGGGCCCAGGCGAGTTCGGAAGGTTCACGGTCCAGCACGGTGGCACAAGCGGAGGCGGGGACGAGGAGGATGGTGGAAGTTCTTCAGGGCTGACGTCTCAGTCGCTAGGATCATTCAACCAACCGGGACAGCAAGAGGGGTTTAGAATGGGAGAACCTGTGTTTTCTGGGTATAGCACTGGCAGTGCCCGAGAGCTGACGGCGATGGTTTCGGCGCTGACGCATGTGGTGTCAGGCTCCGACCAGAGAGGCGCCGAATGGTTCCAGGGGACTGGTTTCCCTGTGACGTCAGGTTTTGGCATGGTTCCTCCTCCTCCTTTGTCTGCTTATTCGTCTTCTTCTTCTTCCGGCCCTGTTTTGGGTTCTCCCTCTTCTTCTAGCTCCTGGATTCGCCAGAAACGAGGGCGTGAAGAGGAGAGTGCCGTGCCTAGTGTCTACAGAGCTCTTGGCGACTTCAGAGTACCTTCTCAGGGGGAGTCCTCATCAGTAACGGAAGAAGCTACAAGTATTGCCGCCCCTGGAACCGCCACTACCGCCGCTCCATCGGCGACTGAAACTGCTTCAAATGAAGAAACAGGGGAAAGAAGAAGAAGATACAGAGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCAGCTGAAATTCGGGATCCCCACAAAGCAGCTAGAGTTTGGCTCGGCACATTCGACACAGCAGAGGCTGCTGCGAGAGCTTACGATGAAGCGGCATTGAGATTCAGAGGTAACAGAGCGAAACTAAATTTCCCAGAAATGGTTAGAGTAGTGCCACCCGTTCAGAACTTTCCGGCGACTAGGCTGGCCATTTCTGATTCCCCAACCACCCATTTGCTGCCATCCCCGACGCCTCAGCCGCCGCCGCCGTTGCAGCCGTCGTTCATTCAGTCCCCATCTTTTCAGGGGCATTCCGATTTGATCAGAGACTACTACGAATACTCTCAGTTGCTTCAGAGCTCAGGTGACTTCCATGGACAGCAATGGTTCTATAATTCACAAATGGCTGCTCTTCAATCATCGTCTTCCTTGTTATCATCATCGCCCCTGTCGTCTTCTTCATCACCAACTGCATTTTCACCATCCAGTCAGTTATCCTCTGCTTCGTTTCCTCTGTTTTCCAGTCAGCAAATGGGTTACTTCCGACCACCAGGAAACCAGACTCAGGGCGGTGGGGGGTCAGATTTTCCGGCATCAACTTGGTCAGATACCAGTAGCTATCCTCCTCCATCCGGTTGA 1275 0.5388 MCLLTVAHQRGPGEFGRFTVQHGGTSGGGDEEDGGSSSGLTSQSLGSFNQPGQQEGFRMGEPVFSGYSTGSARELTAMVSALTHVVSGSDQRGAEWFQGTGFPVTSGFGMVPPPPLSAYSSSSSSGPVLGSPSSSSSWIRQKRGREEESAVPSVYRALGDFRVPSQGESSSVTEEATSIAAPGTATTAAPSATETASNEETGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPEMVRVVPPVQNFPATRLAISDSPTTHLLPSPTPQPPPPLQPSFIQSPSFQGHSDLIRDYYEYSQLLQSSGDFHGQQWFYNSQMAALQSSSSLLSSSPLSSSSSPTAFSPSSQLSSASFPLFSSQQMGYFRPPGNQTQGGGGSDFPASTWSDTSSYPPPSG 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1019 424 MobiDBLite consensus disorder prediction 117 209 - -
Glsi12g1019 424 MobiDBLite consensus disorder prediction 292 307 - -
Glsi12g1019 424 FunFam Ethylene-responsive transcription factor 2 206 265 - -
Glsi12g1019 424 ProSiteProfiles AP2/ERF domain profile. 207 264 IPR001471 GO:0003700|GO:0006355
Glsi12g1019 424 SMART rav1_2 207 270 IPR001471 GO:0003700|GO:0006355
Glsi12g1019 424 CDD AP2 215 265 IPR001471 GO:0003700|GO:0006355
Glsi12g1019 424 MobiDBLite consensus disorder prediction 164 197 - -
Glsi12g1019 424 PANTHER DNA-BINDING DOMAIN 170 358 IPR044808 GO:0003700|GO:0009873
Glsi12g1019 424 MobiDBLite consensus disorder prediction 285 311 - -
Glsi12g1019 424 SUPERFAMILY DNA-binding domain 207 265 IPR016177 GO:0003677
Glsi12g1019 424 Gene3D AP2/ERF domain 206 266 IPR036955 GO:0003700|GO:0006355
Glsi12g1019 424 MobiDBLite consensus disorder prediction 117 139 - -
Glsi12g1019 424 MobiDBLite consensus disorder prediction 358 424 - -
Glsi12g1019 424 MobiDBLite consensus disorder prediction 31 54 - -
Glsi12g1019 424 MobiDBLite consensus disorder prediction 13 62 - -
Glsi12g1019 424 Pfam AP2 domain 207 256 IPR001471 GO:0003700|GO:0006355
Glsi12g1019 424 PRINTS Ethylene responsive element binding protein signature 208 219 IPR001471 GO:0003700|GO:0006355
Glsi12g1019 424 PRINTS Ethylene responsive element binding protein signature 230 246 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1019 Glsi-ChrGlsi12 27996072 27997623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1019 199 278 AP2-EREBP Transcription Factor Family AT2G33710 72.500 5.11e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi12g1019 AP2 8.4e-15 CL0081