LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g1014	ATGGATTCCACCTTTCAAGCCATCCTTGCCGCAACGATAAGCTTTTTCGTCGTTACCCTCCTCTTCGCAGCCATAATCCTCGTCTGCAAAGGGAACAAGCGGACGTCCCCCCGCCAGCGCCAGCTCCATCCCCGAACCCAGAATCGGACCCAATCGGAGCTCTCCTCCATCGCCGTAGATGCAAGCTGGTCTTTCGACCCGTATGTTCAGATCTCCATGGACGAAATCGTCAAGGCCACCAAGAACTTCTCGCCGGACCTGATTATCGGAGACGGCAGCTTTGGTCTCGTCTACAAGGCGCGTCTCTCCAACGGCCTAGTCGTGGCTATCAAGAAGCTCTCGCCGGACGCCTTCCAAGGGTTTCGGGAATTTCGGGCCGAGATGGAAACGCTGGGTAAGCTCCGACACCAGAACATCGTGAAGATTCTCGGGTACTGGGCTTCGGGTCCGGAGAGAATGTTGGTCTACGAGTTCATTGAGAAAGGGAATCTCGACCAATGGCTGCACGACCCGTCTTCCTCGTCCGGATTCGACGACGGTTCCATGGTGCGCTTACCGTTATCTTGGGAAATGAGGGTGAAGATAATTAGGGGTGTGGCGAATGGGCTGCGTTATTTACATGAGCTCGAGAAACCCATTATTCACAGGGACATAAAGGCCAGCAATGTGTTGTTGGACTCTGATTTCGAGGCCCATATTGCTGATTTTGGGCTTGCAAGAAGGATAGATACTTCCCACTCTCATGTGTCAACGCAATTCGCGGGCACCATGGGGTACATGCCGCCGGAGTATATAGATGGGGTGAATGTGGCTAACGTGAAGGTGGATGTGTACAGTTTTGGGGTTTTGATGCTGGAAACTGCAACGGGGCGGAGGCCCAATTTGGCAGTGACCTTTGAGAAGAAAGACATTGGGCTTGTGAAATGGGCCAGAACAATGACGGCCCAAGATGATGGAATGGAAATGGTTGATTCCAATATTTCAAAGGAAGGGATAAATGAAGATAGTGTGAAAGAGTATTTTAAGATTGCCTGTAAGTGCACTAGTGAAATGCAGAAAGATAGGCCTATAATGCCGCAGGTTGTGGAAATGCTGGACAAAATGCCGGTGTAA	1113	0.5112	MDSTFQAILAATISFFVVTLLFAAIILVCKGNKRTSPRQRQLHPRTQNRTQSELSSIAVDASWSFDPYVQISMDEIVKATKNFSPDLIIGDGSFGLVYKARLSNGLVVAIKKLSPDAFQGFREFRAEMETLGKLRHQNIVKILGYWASGPERMLVYEFIEKGNLDQWLHDPSSSSGFDDGSMVRLPLSWEMRVKIIRGVANGLRYLHELEKPIIHRDIKASNVLLDSDFEAHIADFGLARRIDTSHSHVSTQFAGTMGYMPPEYIDGVNVANVKVDVYSFGVLMLETATGRRPNLAVTFEKKDIGLVKWARTMTAQDDGMEMVDSNISKEGINEDSVKEYFKIACKCTSEMQKDRPIMPQVVEMLDKMPV	370

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g1014	370	SMART	serkin_6	83	341	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi12g1014	370	ProSiteProfiles	Protein kinase domain profile.	83	370	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi12g1014	370	Gene3D	Phosphorylase Kinase; domain 1	43	158	-	-
	Glsi12g1014	370	ProSitePatterns	Protein kinases ATP-binding region signature.	89	112	IPR017441	GO:0005524
	Glsi12g1014	370	Gene3D	Transferase(Phosphotransferase) domain 1	159	370	-	-
	Glsi12g1014	370	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	7	367	-	-
	Glsi12g1014	370	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	213	225	IPR008271	GO:0004672\|GO:0006468
	Glsi12g1014	370	FunFam	Phytosulfokine receptor 2	159	369	-	-
	Glsi12g1014	370	SUPERFAMILY	Protein kinase-like (PK-like)	63	365	IPR011009	-
	Glsi12g1014	370	Pfam	Protein kinase domain	88	363	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi12g1014	370	FunFam	Phytosulfokine receptor 2	45	158	-	-
	Glsi12g1014	370	CDD	STKc_IRAK	89	368	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g1014	Glsi-ChrGlsi12	27951377	27952489	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g1014	8	368	Receptor kinase-like Gene Family	AT1G55610	38.587	8.04e-72	241

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-Xb-1	Glsi12g1014		Pkinase	5.9e-46	CL0016