Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1009 ATGGGCTGTTTTCAGGCTAAGCCATCGGACGGCTCTGCATCTAGGGTCTTGGAGAGGTTGAAATTACAAAATGGGTATGTTGCAAATGGTGATTTTATTGCTCAACGACAATCCACGGGGCAAAGATATGATCGTAGGGAGTCTGGTAGGCTGAACCATGGCCAATACAGAAAGCATAAGGTTGAGTCTGGTATTGGTAATGATGGAAGACAAGATGGTGACATTGCCAGAGTAGAAGGAGGTAGAGATGAGGAGAAATTGACTAAGAGAGAGGGGAAGAGAGAAGCTATCCGTATTAGTTCAAAGTTGTCAAGGAAATCTTTTAACGATGAGATGGTTGACGGTTGGCCTAAATGGCTAGTTGATAACGTTCCTAGAGAAGCATTGGCTGGCTTGGTTCCCAAGAGTGCCGAATCATACAGTATGATTGATAAGGTAGGACAGGGAACCTACAGCAATGTTTATAAAGCTCGAGATCGGAGCACTGGATTACTTGTGGCCCTCAAGAAGGTGCGCTTTGATACATCAGAGCCTGAAAGCATTAAATTTATGGCAAGAGAAATTATGATATTACAAAGACTAGATCATCCCAATGTAATAAAACTTAAAGGGTTGGCTACTTCAAGAATGCAGTACAGTCTTTATCTAGTTTTTGATTTCATGCAATCAGACTTGGCTAGAATTATTTCTCGTCCTGAAGGGAGATTAACCGAACCACAGGTCAAGGCCTATATGCATCAATTGCTATCAGGTCTGCAGCATTGCCATGATAGAGGCATTTTGCATCGAGATATTAAGGGGTCAAACCTTTTGATTAACAAAAATGGAATGCTAAAGATTGCAGATTTTGGGCTTGCCAATTATTATAGTCCGAACCATAACCAGCCTCTCACAAGCCGGGTTGTGACATTATGGTACCGAGCTCCTGAGCTGCTGTTAGGTGCCACAGATTATGGAGTTGGCATTGATCTATGGAGTGCTGGATGCCTCCTGGCAGAAATGTTCACAGGGATTCCAATTATGCCTGGAAGAACAGAGGTTGAGCAACTTCATAGAATTTTCAGGTTGTGTGGCACACCATCAGAGGAGTATTGGAAAAATTTGAAATTTACTACTACTTTTAGACCTCCAAAGTCTTATAGACCCATCCTTGCAGAAACTTTCCGAGATCTCCCTCCATCTTCTTTGGGTCTTTTATGTACTCTACTTGCTCTGGATCCTGCATACCGTGGCAGTGCATCTAAAGCTCTCCAAAATCAATTTTTCTATACAAGTCCATTGGCATGTGACCTTTCTGGTCTGCCTGTAATCTACAGAGAGGATGAGGAGCAAGAGCGAGCCAATGAAAAAATCAAGGGCATGGACTCTAAAATTAGACGATCTCGTACACATCTGGAGCGTCATAGGAAGAATCTGGCATCTGCACGTCCAATAGAACATACTGTATCTTCTAAAGAGGAATTGAGAAGGAATGCTGCAACATATGTCCCAAGTGAAGAACTGGGTAGCACAACCACAACAATTAGTATCTCGTCTAGTGTAAACCCAGCTGGGGCAAAGGATCACTCGCCTTGGTTTCCCGCCCCATATTTGTCTTCAGATCAAAAGCTGTCCCCCAAAATCCATCGCCATAATTATGGTGCTGAAAACATCAAGAAATTTCCTCCTTTACCCAAGGAAGATGACAACAGGTACAGATTACACCAGGTTTACCGGTCTGCTTCCTCCAAAGATTTCAGAAACTTGAAACAAGGAGACATTTTACTCTTTGAAATAGATGATTAG 1785 0.4263 MGCFQAKPSDGSASRVLERLKLQNGYVANGDFIAQRQSTGQRYDRRESGRLNHGQYRKHKVESGIGNDGRQDGDIARVEGGRDEEKLTKREGKREAIRISSKLSRKSFNDEMVDGWPKWLVDNVPREALAGLVPKSAESYSMIDKVGQGTYSNVYKARDRSTGLLVALKKVRFDTSEPESIKFMAREIMILQRLDHPNVIKLKGLATSRMQYSLYLVFDFMQSDLARIISRPEGRLTEPQVKAYMHQLLSGLQHCHDRGILHRDIKGSNLLINKNGMLKIADFGLANYYSPNHNQPLTSRVVTLWYRAPELLLGATDYGVGIDLWSAGCLLAEMFTGIPIMPGRTEVEQLHRIFRLCGTPSEEYWKNLKFTTTFRPPKSYRPILAETFRDLPPSSLGLLCTLLALDPAYRGSASKALQNQFFYTSPLACDLSGLPVIYREDEEQERANEKIKGMDSKIRRSRTHLERHRKNLASARPIEHTVSSKEELRRNAATYVPSEELGSTTTTISISSSVNPAGAKDHSPWFPAPYLSSDQKLSPKIHRHNYGAENIKKFPPLPKEDDNRYRLHQVYRSASSKDFRNLKQGDILLFEIDD 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1009 594 CDD STKc_CDK9_like 140 422 - -
Glsi12g1009 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Glsi12g1009 594 Gene3D Phosphorylase Kinase; domain 1 130 222 - -
Glsi12g1009 594 SMART serkin_6 140 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1009 594 ProSitePatterns Protein kinases ATP-binding region signature. 146 169 IPR017441 GO:0005524
Glsi12g1009 594 FunFam Putative serine/threonine-protein kinase 223 460 - -
Glsi12g1009 594 MobiDBLite consensus disorder prediction 61 89 - -
Glsi12g1009 594 ProSiteProfiles Protein kinase domain profile. 140 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1009 594 PANTHER CELL DIVISION PROTEIN KINASE 138 427 - -
Glsi12g1009 594 Gene3D Transferase(Phosphotransferase) domain 1 223 460 - -
Glsi12g1009 594 FunFam probable serine/threonine-protein kinase At1g54610 127 222 - -
Glsi12g1009 594 SUPERFAMILY Protein kinase-like (PK-like) 135 426 IPR011009 -
Glsi12g1009 594 Pfam Protein kinase domain 140 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1009 Glsi-ChrGlsi12 27918437 27922604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1009 135 450 Core Cell Cycle Gene Families AT5G10270 45.161 2.93e-93 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Glsi12g1009 Pkinase 2.3e-67 CL0016