Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0980 ATGGCTATCTATGCCTTCATTCCCACTACCATTCGCACTAAAAACACAGTATTGGCAGCAGTAATCAGAAGCCTGGCATTGGCGCTCGCTGCCATTTGCTTCACCACCATCTTCAACAACAGGAAGTTTGGAACCCCTACTCCATTAGACCCAGTTCTTAGTCTTCACTTTCACTACCAAGTCACTTTCGTAATGGAAAATATTGGTCTTTATAGTGTTACCCCATCTTTGTTTTTTTCTGTGTTCTTCTTCTGGTTGACCATGACAAAGGTAGAAGTCACCTCTCTCTCACCTGATGGACAAGCCCTTCTTTCCCTTGTGTCTGCTGCAGGTTACCCTTCTGCTAAATCCTCCTCCTCTGTTCTTTCCTCATGGAACCCATCAAGCTCAACACCTTGTTCATGGCAGGGCATCACTTGCTCCCCACAAGGCAGAGTCATTTCCCTCTCTATTCCAGACACTTTCCTTAACCTTTCCTCTCTCCCTTCCCAGCTCTCCTCTTTATCATCTCTCCAACTTCTCAATCTGTCTTCCACTAATGTTTCTGGCTCCATCCCACCCTCCTTTGGCCAACTCTCTCATCTTCGCCTCCTTGACCTATCCTCAAATTCTCTCACTGGTTCCATTCCTGCAGAGCTTGGCAAGCTCTCTTTGCTTCAATTCCTTTTCTTGGACTCCAACAGATTGTCCGGAAGCATTCCTCCACAGCTTGCTAATCTTACTTCACTTGAAGTTTTCTGCCTCCAAGATAATCTCCTTAATGGGTCTATACCATCGCAATTAGGCTCTTTGACATCTCTACAGCAGTTCCGGATTGGGGGTAATCCATATCTAACTGGAGAAATTCCATCACAGTTAGGACTACTCACCAACCTCACCACATTTGGTGCAGCAGCCACTGGACTTTCAGGTGCTATACCCTCTACATTTGGGAACTTGATCAATCTCCAAACACTAGCCCTCTACGATACAGAAATCTCTGGTTCAATACCACCAGAGCTTGGCTTGTGTTCTGAGTTAAGGAATCTGTATTTGCACATGAATAAGCTGACTGGTTCTATTCCACCTCCACTGGGTAAGTTGCAAAAGCTTACTAGCTTGCTTCTTTGGGGTAATGCATTATCTGGGTCAATCCCTGCTGAGATTTCCAATTGTTCATCGCTTGTTGTATTTGATGCCTCTGCTAATGAACTTTCGGGTGAAATACCGGGCGACTTTGGGAAGCTAGTAGTTCTAGAACAGCTTCATCTATCAGACAATTCACTCACTGGGAAAATACCATGGCAGTTGAGCAACTGTACCAGTCTAGCTACTCTTCAGCTTGACAAGAATCAGTTATCAGGTACAATTCCATGGCAGGTTGGGAGATTGAAGTTCTTGCAGAGTTTTTTCTTATGGGGCAATTCAGTGTCTGGAACCATACCTTCCTCTTTTCGCAACTGTACTGAACTTTATGCACTTGATCTTTCAAGGAACAAGTTAACAGGTTCCATCCCAGACGAAATTTTCAGCTTGAAGAAGTTGAGTAAGCTTTTGCTTCTGGGCAATTCTTTATCTGGAGAATTGCCACCAAGTGTCGCGAATTGTGAGTCTTTAGTGAGGTTGAGGCTTGGAGAAAACCAGATTTCAGGACAGATTCCTAAAGAGATAGGCCAACTGCAGAATCTGGTGTTCCTTGATTTGTACATGAACCATTTCTCTGGAAGTTTACCAGTGGAGATAGCGAACATCACAGTTCTTGAGCTTTTAGATGTTCACAATAATTACATTACTGGGGATATCCCATCTCAGCTTGGGGAGCTTGTAAATTTAGAGCAGCTTGATCTTAGTCGAAACAGTTTGACAGGTGAAATTCCTTGGAGCTATGGAAACTTGAGTTATTTGAACAAGCTCATTATCAACAATAATTTACTGACAGGGTCAATACCAAAATCCATTAGAAACTTGCAGAAGCTAACTCTACTGGATTTGAGTTACAACAACTTCTCTGGTGACATCCCACCTGAGATTGGTTATATTACAAGCTTAACCATCAGTTTGGACTTAAGCTCAAACGCATTTACCGGAGAAATCCCCGAGTCAATGGCTAGTTTGACGCAGTTACAATCACTTGATCTTTCTCATAATATGCTTTTTGGAAGAATTAAGGTTTTGGGTTCCCTTACCAGTCTCACTTCCCTGAATATCTCCTACAACAACTTCTCTGGTCCTATTCCAGTAACTCCTTTCTTCAGAACTCTATCTTCAAATTCATATATTCAGAACACCCATCTTTGTGAATCCCTTGATGGGACCACATGTTCAAGTCTGATTCAAAAAAACGGTTTAAAATCTGCCAAAACCATAGCTTTGATTTCAGTAATTCTTGCCTCGGTTACTATAATTGTCATTGCATCATGGGTTCTAGTAACACGTAATCACAAGTATATGGTTGAAAAATCTTTGGGGACGACAGCGTGTGCCACAGGAGCGGAGGATTTCTCTTATCCTTGGACTTTCATCCCATTTCAAAAACTCAACTTCACCGTAGATAATATTTTGGATTGCTTAAAGGATGAAAATGTGATTGGAAAGGGTTGCTCCGGTGTTGTATATAAGGCTGAAATGCCTAATGGGGAGTTGATAGCAGTGAAGAAGCTTTGGAAAGCAAACAAAGAGGAAGAAATAGTGGACTCTTTTGCTGCAGAAATTCAGATTCTTGGGCACATCCGGCACAGGAACATTGTGAGGCTTTTAGGTTATTGTTCTAACAGGAGTGTTAAACTTCTTCTCTATAACTACATTTCAAATGGCAACTTAAGACAGTTGTTGCAAGGGAACAGGTACTTAGACTGGGAAACAAGGTACAAGATTGCTGTTGGGTCAGCTCAGGGTCTAGCATACATTCATCATGACTGTGTGCCCGCAATTCTTCACAGAGATGTTAAGTGCAATAACATACTTTTAGATTCCAAGTTCGAAGCATATCTGGCAGATTTTGGTCTCGCAAAGCTGATGAATTCACCAACTTATCACCATGCTATGTCTAGAGTTGCTGGATCTTATGGTTATATTGCCCCAGAGTATGGCTACACCATGAACATAACAGAGAAGAGTGACGTCTACAGTTACGGAGTGGTTTTGCTGGAGATACTAAGTGGGAGAAGTGCTGTTGAATCCCATGTTGGAGATGGGATACACATAGTTGAGTGGGTGAAGAGGAAGATGGGAAGCTTTGAACCAGCCGTGTCAATTCTGGATACAAAACTGCAAGGTCTACCAGATCAAATGGTGCAAGAGATGCTTCAAACACTTGGAATTGCCATGTTTTGTGTGAACTCTTCACCGGCAGAGCGCCCCACGATGAAGGAAGTGGTGACCCTACTAATGGAGGTGAAGAGCCAGCCTGAGGAGGTGGGGAAGACCTCTCAACCTCTAATAAAGCAGTCCTCAAATCAAAGTTGA 3444 0.4283 MAIYAFIPTTIRTKNTVLAAVIRSLALALAAICFTTIFNNRKFGTPTPLDPVLSLHFHYQVTFVMENIGLYSVTPSLFFSVFFFWLTMTKVEVTSLSPDGQALLSLVSAAGYPSAKSSSSVLSSWNPSSSTPCSWQGITCSPQGRVISLSIPDTFLNLSSLPSQLSSLSSLQLLNLSSTNVSGSIPPSFGQLSHLRLLDLSSNSLTGSIPAELGKLSLLQFLFLDSNRLSGSIPPQLANLTSLEVFCLQDNLLNGSIPSQLGSLTSLQQFRIGGNPYLTGEIPSQLGLLTNLTTFGAAATGLSGAIPSTFGNLINLQTLALYDTEISGSIPPELGLCSELRNLYLHMNKLTGSIPPPLGKLQKLTSLLLWGNALSGSIPAEISNCSSLVVFDASANELSGEIPGDFGKLVVLEQLHLSDNSLTGKIPWQLSNCTSLATLQLDKNQLSGTIPWQVGRLKFLQSFFLWGNSVSGTIPSSFRNCTELYALDLSRNKLTGSIPDEIFSLKKLSKLLLLGNSLSGELPPSVANCESLVRLRLGENQISGQIPKEIGQLQNLVFLDLYMNHFSGSLPVEIANITVLELLDVHNNYITGDIPSQLGELVNLEQLDLSRNSLTGEIPWSYGNLSYLNKLIINNNLLTGSIPKSIRNLQKLTLLDLSYNNFSGDIPPEIGYITSLTISLDLSSNAFTGEIPESMASLTQLQSLDLSHNMLFGRIKVLGSLTSLTSLNISYNNFSGPIPVTPFFRTLSSNSYIQNTHLCESLDGTTCSSLIQKNGLKSAKTIALISVILASVTIIVIASWVLVTRNHKYMVEKSLGTTACATGAEDFSYPWTFIPFQKLNFTVDNILDCLKDENVIGKGCSGVVYKAEMPNGELIAVKKLWKANKEEEIVDSFAAEIQILGHIRHRNIVRLLGYCSNRSVKLLLYNYISNGNLRQLLQGNRYLDWETRYKIAVGSAQGLAYIHHDCVPAILHRDVKCNNILLDSKFEAYLADFGLAKLMNSPTYHHAMSRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRSAVESHVGDGIHIVEWVKRKMGSFEPAVSILDTKLQGLPDQMVQEMLQTLGIAMFCVNSSPAERPTMKEVVTLLMEVKSQPEEVGKTSQPLIKQSSNQS 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0980 1147 SMART serkin_6 850 1126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0980 1147 Gene3D Ribonuclease Inhibitor 353 454 IPR032675 -
Glsi12g0980 1147 Gene3D Ribonuclease Inhibitor 98 258 IPR032675 -
Glsi12g0980 1147 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 928 1140 - -
Glsi12g0980 1147 Pfam Protein kinase domain 852 1119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0980 1147 Pfam Leucine Rich Repeat 603 624 IPR001611 GO:0005515
Glsi12g0980 1147 Pfam Leucine rich repeat 460 518 IPR001611 GO:0005515
Glsi12g0980 1147 Pfam Leucine rich repeat 170 229 IPR001611 GO:0005515
Glsi12g0980 1147 Pfam Leucine rich repeat N-terminal domain 97 141 IPR013210 -
Glsi12g0980 1147 ProSiteProfiles Leucine-rich repeat profile. 700 722 IPR001611 GO:0005515
Glsi12g0980 1147 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 96 260 - -
Glsi12g0980 1147 Gene3D Transferase(Phosphotransferase) domain 1 928 1143 - -
Glsi12g0980 1147 FunFam Putative LRR receptor-like serine/threonine-protein kinase 500 769 - -
Glsi12g0980 1147 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 276 499 - -
Glsi12g0980 1147 ProSiteProfiles Protein kinase domain profile. 850 1140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0980 1147 MobiDBLite consensus disorder prediction 1128 1147 - -
Glsi12g0980 1147 MobiDBLite consensus disorder prediction 1130 1147 - -
Glsi12g0980 1147 SUPERFAMILY Protein kinase-like (PK-like) 836 1122 IPR011009 -
Glsi12g0980 1147 Gene3D Ribonuclease Inhibitor 259 352 IPR032675 -
Glsi12g0980 1147 ProSitePatterns Serine/Threonine protein kinases active-site signature. 970 982 IPR008271 GO:0004672|GO:0006468
Glsi12g0980 1147 Gene3D Ribonuclease Inhibitor 462 774 IPR032675 -
Glsi12g0980 1147 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 831 927 - -
Glsi12g0980 1147 SUPERFAMILY L domain-like 121 471 - -
Glsi12g0980 1147 ProSitePatterns Protein kinases ATP-binding region signature. 856 879 IPR017441 GO:0005524
Glsi12g0980 1147 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 372 1121 - -
Glsi12g0980 1147 Gene3D Phosphorylase Kinase; domain 1 827 927 - -
Glsi12g0980 1147 SUPERFAMILY RNI-like 402 758 - -
Glsi12g0980 1147 SMART LRR_typ_2 409 433 IPR003591 -
Glsi12g0980 1147 SMART LRR_typ_2 240 264 IPR003591 -
Glsi12g0980 1147 SMART LRR_typ_2 649 673 IPR003591 -
Glsi12g0980 1147 SMART LRR_typ_2 168 191 IPR003591 -
Glsi12g0980 1147 SMART LRR_typ_2 361 385 IPR003591 -
Glsi12g0980 1147 SMART LRR_typ_2 481 505 IPR003591 -
Glsi12g0980 1147 SMART LRR_typ_2 601 624 IPR003591 -
Glsi12g0980 1147 SMART LRR_typ_2 553 576 IPR003591 -
Glsi12g0980 1147 SMART LRR_typ_2 192 216 IPR003591 -
Glsi12g0980 1147 SMART LRR_typ_2 698 725 IPR003591 -
Glsi12g0980 1147 SMART LRR_typ_2 313 337 IPR003591 -
Glsi12g0980 1147 PRINTS Leucine-rich repeat signature 195 208 - -
Glsi12g0980 1147 PRINTS Leucine-rich repeat signature 698 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0980 Glsi-ChrGlsi12 27617554 27621367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0980 95 1126 Receptor kinase-like Gene Family AT5G56040 46.124 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi12g0980 Pkinase 4.3e-45 CL0016