Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0977 ATGAAGTGCCATGACCTTAACCCCAAAGCAGCAGAAACATCCAGTGATTCTGTTATTTATCGTATTTCTCTTTTGCAGTGTCCAAACTATTTTGTTGGCGGCTATGGGATGGATTTTCCTCAACTGTATAGGAACTTGCCTTATGTTGGTGTCTTGAAGCCTGAACATTACAGTGGAGTAGTTGCTTCTTCTTGTCTCTTTATCTACGTAACATATGACTCCTGGTTGAAGACAACAGAATCTCCAAATATCAAAACGATTCGAACCTATCAACTACTGAAGGGATCATCAAAATATCAATCTTACCCAAAAACACAGGGTGGCGCTGCCGCAACTCCTATGGCGGGAGCTACAGGAAGAGCCCTCCTCACTCTCTCTCTAACCTCGAACCTCTCTGCATTCGCACGCCTGTCTCATGGGCATCGCATTCCATTTCTCAGGCTCTCACCAAAACCCAGTAGGGTTTTGCTAGGGTTTAGGCCCCTCTGCACTATTACCACCACCACCGAGACGACGGAAACCATCGACCCAGACCAAATCAGGCACTCCATTCTTCTTGAGAGACTCAGGCTCAGGCATCTTAAGGATTCCCCTAAAACCCCGGAAATCAAGAATTCGACTAAACCACTTGGTTCCGCTGAGAAGGGTCGTGAGAGTGAGCTGAAGAAGTCAGAGAAGAAGAAGTTGGTTGGCAGTTTTGAGGAGTTGGGCCTTAGTGAGGAGGTAAATGGAGCAGTGAGGGAGATGGGTATTGAGGTTCCCACTGAGATTCAGTGTATTGGCATCCCTGCTGTCCTGGAAGAGAAGAGTGTGGTTTTGGGATCTCATACTGGGTCCGGCAAGACTCTTGCTTACATGCTGCCTCTTGTTCAGCTGCTAAGACGGGATGAACAATTGAATGGATTACTTATTAAGCCCAGGCGGCCCCGAGCTGTTGTGCTATGCCCGACTAGGGAGTTGTCTGAGCAGGTGTTTCGAGTTTCAAAATCTATAAGTCATCATGCACGGTTCAGGTCTACGATGGTAAGTGGTGGTGGTCGTCTCAGGCCTCAGGAGGATTCATTAAATAACCCCATCGACATGGTAGTTGGTACCCCTGGCAGGATTCTTCAACACATTGAGGAGGGAAACATGGTATATGGTGACATCAAATACTTGGTATTGGATGAGGCAGACACAATGTTTGATCGAGGCTTTGGTCCTGATATACGCAAGTTTCTTGGCCCACTAAAGCATCGTGCGACAAAGCCTGATGGCCTAGGTTTTCAGACTGTCTTGGTCACTGCAACTATGACAAAGGCAGTGCAAAAGTTGATTGATGAGGAGTTTCAAGGCATTGAGCATCTGCGTACATCAACACTACATAAAAAGATTGCATCTGCACGTCATGATTTTATTAAGCTTTCAGGTTCTGAAAACAAGCTGGAAGCATTACTACAGGTTCTTGAGCCAAGCCTGACAAAGGGGAACAGAGTGATGGTTTTCTGTAATACATTGGATTCTAGCCGTGCTGTGGATCATTTTCTCAGTGAAAATCAGATATCTACAGTCAATTACCATGGGGAGGTACCGGCAGAGAAAAGAGTTGAAAACCTCAAGAAGTTTAAGAGTGACGATGAAGATTGCCCTACATTGGTTTGCACAGACTTGGCTGCCAGGGGTCTGGATTTAGCTGTTGATCATGTTATAATGTTTGATTTCCCCTTAAATTCTATTGACTACCTTCATCGCACTGGGAGAACAGCCCGTATGGGTGCAAAAGGGAAAGTAACAAGCTTGGTTGCTAAAAAGGACTTGATCTTGGCCACACGAATAGAGGAAGCAATAAGAAAGAATGAGAGCTTGGAGGCTCTCACTAAAGAAAGTGTTCGGAGGGACGTTGCCAGGACCCAAATAACTCAGCAGAAGGGGAAGAATACCAAACTGGTTAGAGTTTCCAAAGCAAAAAACACTTCTGGTGTCCATGCCACTTCTAGAAAATTATCAAAAGCATCGAAAAATACTTCTGCATCGAAAGTATCAAAAAATACATCTGGTGTTCATGCCACTTCTAGAAAAGTATCAAAACCATCAAAATCTGTGAAGGCAGGAATTCGAGTTACAAAATCTGTAAAATCTTCCGGTGCAAGTAGCACGAGAAAAGCTTCTGCAGGGAAGAAGCAAACAAGTAAAAAGGGCAGTGCCGGCAAATCCACAAATTCTAAACTGAGTGTTGTAGGGTTTAGGGGGCGGAGTTCATCCTCAAACAAGAAAGAACCACAATTTTGA 2268 0.4484 MKCHDLNPKAAETSSDSVIYRISLLQCPNYFVGGYGMDFPQLYRNLPYVGVLKPEHYSGVVASSCLFIYVTYDSWLKTTESPNIKTIRTYQLLKGSSKYQSYPKTQGGAAATPMAGATGRALLTLSLTSNLSAFARLSHGHRIPFLRLSPKPSRVLLGFRPLCTITTTTETTETIDPDQIRHSILLERLRLRHLKDSPKTPEIKNSTKPLGSAEKGRESELKKSEKKKLVGSFEELGLSEEVNGAVREMGIEVPTEIQCIGIPAVLEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEQLNGLLIKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKHRATKPDGLGFQTVLVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLTKGNRVMVFCNTLDSSRAVDHFLSENQISTVNYHGEVPAEKRVENLKKFKSDDEDCPTLVCTDLAARGLDLAVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLILATRIEEAIRKNESLEALTKESVRRDVARTQITQQKGKNTKLVRVSKAKNTSGVHATSRKLSKASKNTSASKVSKNTSGVHATSRKVSKPSKSVKAGIRVTKSVKSSGASSTRKASAGKKQTSKKGSAGKSTNSKLSVVGFRGRSSSSNKKEPQF 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0977 755 MobiDBLite consensus disorder prediction 703 755 - -
Glsi12g0977 755 Pfam DEAD/DEAH box helicase 255 438 IPR011545 GO:0003676|GO:0005524
Glsi12g0977 755 Gene3D - 458 698 IPR027417 -
Glsi12g0977 755 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 474 624 IPR001650 -
Glsi12g0977 755 MobiDBLite consensus disorder prediction 195 224 - -
Glsi12g0977 755 Gene3D - 199 447 IPR027417 -
Glsi12g0977 755 Gene3D - 11 62 IPR029057 -
Glsi12g0977 755 MobiDBLite consensus disorder prediction 633 690 - -
Glsi12g0977 755 CDD DEADc 245 441 - -
Glsi12g0977 755 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 262 449 IPR014001 -
Glsi12g0977 755 CDD SF2_C_DEAD 462 594 - -
Glsi12g0977 755 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 172 622 - -
Glsi12g0977 755 SMART helicmild6 503 585 IPR001650 -
Glsi12g0977 755 Pfam Helicase conserved C-terminal domain 474 585 IPR001650 -
Glsi12g0977 755 MobiDBLite consensus disorder prediction 633 755 - -
Glsi12g0977 755 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 231 259 IPR014014 GO:0003724
Glsi12g0977 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 605 IPR027417 -
Glsi12g0977 755 SMART ultradead3 250 469 IPR014001 -
Glsi12g0977 755 SUPERFAMILY PRTase-like 24 57 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0977 Glsi-ChrGlsi12 27599863 27609148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0977 230 607 Eukaryotic Initiation Factors Gene Family AT3G19760 29.243 1.65e-39 149