Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0974 ATGGATTTCAGTGATGGTTTTGTATCGAAGGAGCATCACGAGCTTCATCTATCTGTTTCAGAGAGTGCAGATCCATTGTCTGTTTCTCCCTTGCAAATTTCTCCAAAGTCACCAAGGTCTCCAAAACCCCCCAGGTCCCCAAGAGTGCATGGCAAGAGCGGCAAGCAAAGTCCAAATCATGATAGGCAATCACGTTCTCCAAAAGATGGACGCCCAAAGAAAGGTGGTTCTGGGGGGAAAGGCACATGGGGAGGATTACTTGATACGGATGACAAGAACTTTCTTGACCCTTATGACCCAAACTATGACAGCAGTGAGGAATGTGAACATTCAAATGAAAGGAAAATGCCAGGGGATCTGGAGGACTACAAGAAGAGAGCCACAGTAATAGTGGAGGAATACTTTGCCACTGATGATGTTGTGACAACAATAAATGAACTGCGAGAACTTGGAAAGCCAGAGTATAGTTACTATTTTGTCAAAAAGCTCGTCTCTATGTCAATGGACAGACATGACAAAGAAAAAGAAATGGCTGCTGTTCTGTTATCTGCTCTTTATGCTGACACTTTTGAACCTTCACAAGTTCACAGAGGATTTAGTAAATTAGTGCAATCTGCAGATGACTTGATTGTAGATATACCAGACACAGTTGATGTTCTAGCACTTTTCTTAGCTCGAGCAGTGGTTGATGACATACTTCCTCCTGCATTTTTAAGGAAACAGATGGCTAAAACACCAAAGGATTCAAAAGGGGCCGAAGTCTTGAAACGAGCTGAAAAAAACTATCTAGCGGCCCCTATGCATGCAGAAATCATAGAGCGGCGATGGGGAGGTAGTAAGAATGTGACAGTTGATGATATGAAGGCTAGGATAAACAATTTGCTGACAGAATATGTGGCAAGTGGGGACAAGAAAGAAGCTTTTAGATGCATCAAGGATTTGAAAGTTGCCTTTTTCCATCATGAAATAGTGAAACGGGCTCTTATAATGGCAATGGAGAGGCATCAAGCAGAAGGCCCACTACTAGATTTGTTGAAGGAAGCAGCTGAAGAAGGTTTCATTAACTCCAGCCAAATGTCTAAAGGATTTGGTCGGTTAATTGACACTGTTGATGACTTATCACTTGACATACCAAATGCACGTGGAATACTGCAGCAGTTAATGTCCAAGGCAGCATCTGAGGGTTGGTTGTGTGTTTCATCTTTGAAATCACTCTCAGTGGAGCCAGGAAAAAGATCGTTAGCAGATGGGGCTGCCAGAAGTTTCAAGACAAAGGCTCAGTCCATAATTCAAGAGTACTTCTTGTCTGGTGATATATCTGAGGTAAACAGTTGTCTAGAACAAGAGAACACCAGTTGTTGTGCTGAACTGAATGCAATCTTTGTTAAGAGACTGATAACCTTGGCAATGGATCGGAAGAATAGAGAGAAGGAAATGGCTTCTGTTTTACTTTCATCTTTTTGTTTCCCGGCTGATGATGTTGTACATGGTTTTGTAATGTTGATAGAGTCAGCAGATGATACTGCTCTGGATAATCCAATTGTAGTTGAGGATCTTGCTATGTTTCTTGCTAGAGCAGTAGTGGATGAAGTCCTGGCCCCACAATATCTGGAAGAGCTTGGAACACAGTGTTTTGGGCCAGATTCACTTGGGAACAAAGTTCTACAAATGGCAAAGTCATTGCTAAAGGCTAGACTATCTGGGGAGCGAATCTTGAGGTGTTGGGGTGGTGGGGGAAGCAGCAGGCTTGGATGGGCAGTTGAGGATGTCAAAGACAAAATCGGAAAGCTACTTGAGGAGTACGAGTCTGGAGGTGAAATTAGGGAGGCTTGTCGATGCATGAAAGAACTAGGAATGCCATTTTTCCACCATGAGGTTGTGAAGAAAGCATTGGTGGCAATCATGGAAAAGAAGAATGAGAGGTTGTGGGGTCTGCTAAAGGAGTGTTTTGAATCTGGATTAATTACAATGAACCAGATGGCGAAGGGTTTTGGAAGAGTTGCCGAGTCTCTTGATGACTTGGCTTTAGATGTCCCTGATGCTAAAAATCAGTTTACATACTATGTTGAAGAAGCAAAAACTGCAGGATGGTTGGATTCTTCATTTTGTTTCAGCAAAGTGCAACATGCAACAGAGAATGGCACCTGCCAAGTATAA 2157 0.4274 MDFSDGFVSKEHHELHLSVSESADPLSVSPLQISPKSPRSPKPPRSPRVHGKSGKQSPNHDRQSRSPKDGRPKKGGSGGKGTWGGLLDTDDKNFLDPYDPNYDSSEECEHSNERKMPGDLEDYKKRATVIVEEYFATDDVVTTINELRELGKPEYSYYFVKKLVSMSMDRHDKEKEMAAVLLSALYADTFEPSQVHRGFSKLVQSADDLIVDIPDTVDVLALFLARAVVDDILPPAFLRKQMAKTPKDSKGAEVLKRAEKNYLAAPMHAEIIERRWGGSKNVTVDDMKARINNLLTEYVASGDKKEAFRCIKDLKVAFFHHEIVKRALIMAMERHQAEGPLLDLLKEAAEEGFINSSQMSKGFGRLIDTVDDLSLDIPNARGILQQLMSKAASEGWLCVSSLKSLSVEPGKRSLADGAARSFKTKAQSIIQEYFLSGDISEVNSCLEQENTSCCAELNAIFVKRLITLAMDRKNREKEMASVLLSSFCFPADDVVHGFVMLIESADDTALDNPIVVEDLAMFLARAVVDEVLAPQYLEELGTQCFGPDSLGNKVLQMAKSLLKARLSGERILRCWGGGGSSRLGWAVEDVKDKIGKLLEEYESGGEIREACRCMKELGMPFFHHEVVKKALVAIMEKKNERLWGLLKECFESGLITMNQMAKGFGRVAESLDDLALDVPDAKNQFTYYVEEAKTAGWLDSSFCFSKVQHATENGTCQV 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0974 718 ProSiteProfiles MI domain profile. 589 708 IPR003891 -
Glsi12g0974 718 MobiDBLite consensus disorder prediction 1 116 - -
Glsi12g0974 718 SMART ma3_7 287 398 IPR003891 -
Glsi12g0974 718 SMART ma3_7 590 699 IPR003891 -
Glsi12g0974 718 SMART ma3_7 123 234 IPR003891 -
Glsi12g0974 718 SMART ma3_7 422 533 IPR003891 -
Glsi12g0974 718 SUPERFAMILY ARM repeat 119 280 IPR016024 -
Glsi12g0974 718 ProSiteProfiles MI domain profile. 122 243 IPR003891 -
Glsi12g0974 718 ProSiteProfiles MI domain profile. 286 407 IPR003891 -
Glsi12g0974 718 ProSiteProfiles MI domain profile. 421 542 IPR003891 -
Glsi12g0974 718 MobiDBLite consensus disorder prediction 54 75 - -
Glsi12g0974 718 MobiDBLite consensus disorder prediction 1 19 - -
Glsi12g0974 718 Gene3D - 273 405 - -
Glsi12g0974 718 Gene3D - 573 705 - -
Glsi12g0974 718 SUPERFAMILY ARM repeat 420 580 IPR016024 -
Glsi12g0974 718 MobiDBLite consensus disorder prediction 92 116 - -
Glsi12g0974 718 Gene3D - 111 263 - -
Glsi12g0974 718 Gene3D - 415 565 - -
Glsi12g0974 718 SUPERFAMILY ARM repeat 586 704 IPR016024 -
Glsi12g0974 718 FunFam programmed cell death protein 4 411 566 - -
Glsi12g0974 718 FunFam programmed cell death protein 4 112 265 - -
Glsi12g0974 718 Pfam MA3 domain 422 532 IPR003891 -
Glsi12g0974 718 Pfam MA3 domain 591 699 IPR003891 -
Glsi12g0974 718 Pfam MA3 domain 124 234 IPR003891 -
Glsi12g0974 718 Pfam MA3 domain 288 397 IPR003891 -
Glsi12g0974 718 SUPERFAMILY ARM repeat 283 403 IPR016024 -
Glsi12g0974 718 PANTHER PROGRAMMED CELL DEATH 4 16 702 IPR039778 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0974 Glsi-ChrGlsi12 27585224 27587874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0974 588 699 Eukaryotic Initiation Factors Gene Family AT5G57870 33.043 6.16e-10 60.8