Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0969 ATGAGTTTGGCATCGGACTCTTCTCCGGAGTGTTTCAGCAAGATGATTACGTCGATGCCGGGGTTTCGATTCCATCCTACGGATGAGGAACTGGTTGTGTACTATCTGAAAAGGAAGATGTGTAGGAGGAAGCTGAGGCTCGATGTAATTTGCGATACCGATGTCTACAAGTGGGACCCCGAGGAATTGCCTGGGCAATCAGTGCTGAAAACTGGAGATAGGCAGTGGTTTTTTTTCAGCCCTAGAGATAGGAAGTATCCTAATAGTGCAAGGTCTAATCGAGCAACAAGACATGGGTATTGGAAAGTAACAGGAAAGGATCGTGACGTGACTTACAATTCTCGGGCAGTTGGAGTGAAAAAGACACTGGTTTTCTATAGAGGCAGAGCACCAAATGGTGAGCGAACTGATTGGGTTATGCATGAGTACACCTTGGACGAAGTAGAGCTTAAAAGATGCCCAGGTTTTAAGGACTATTATGCACTTTACAAGTTGTACAAGAAGAGCGGACCTGGTCCTAAAAATGGTGAGCAGTATGGTGCACCATTTAAAGAAGAAGAGTGGGTAGACGATGACTTTGTAGATTTTAGTACTAACTCAGTTGAAAGGGAGGCTCCAATTCAGCAACTTGATGGAGTGACCTCTGTTGATGCAGTCACTTCTAATGGTCAAGTTCAACCTTTGATTGATGATGAAATTGAGGAGTTTTTGAAAAGAATTATGGATGAGCATGTCCCTGACCAGCCACTTTATCCTGCCTTAACTCAGGTTGCTGCTGAAGAAACACAAAGTGCCGTGGTGGATCAATTCTCTACGGAGGTGATGTTTGCCGACCCAATCAAAATGTTTCATCCGAGCAGTCAGCAATGTGATATGCAGCGCAGCTATGACTTCACTCAGTCAGCTAGCTCTCACTTACATGTTTCTGAAGCACCTGAGGTCACTTCTGCTTCTAACATTCAAGTAGAGGAACTTCTCTTTACTGAGGATGACTTTTTGGAAATTGATGATCTCAGTGGTCCTGCACCTTCATCGTCAAACATAGAAAAACCAATGGAGAACCTGCAGTTTGAAGATGGATTAAGTGAACTTGACCTGTTCCATGATGCCGAGATGTTTTTACGTGACATGGGGCACATTGATCAGGAAACTGTTTCGCATCCATATATGAATACTTTCGACAGTAATATTGTAAATCAGGATTATCAGTCACAGCCTATTGGAGAGGATGCAAATCAAACTGGTGGTGAACTCTGGATGCATGCTTATAGGCACATTCTGAGTCCAGCACAACACACTGATGGTTCTTTCTCTCTACCAACCTCAGGTGTGGTTTATGAATCTGCCAGCTTGCACATGCCTACTGAAGGCAATGATAATCAAAGTAGCAGCGTGGGAGATGTTGCTACAAGTAGTTTCTCTTCTGCTCTCTGGGCCTTTGTTGAGTCAATACCTACCACTCCTGCATCAGCTGCTGAAAATGCTCTAGTGAATCGGGCTTTTGAGCGGATGTCTAGCTTTGGTAGGGTGAGAATTAATGTCAAGCAGACAAACGTAGCTGCAGGTAATGACACTACCACTATGAAGAGAGCAGGCAGAAAGGGAGTTTTGTTCCTTTTCTTCCCAGTTCTTGTTGCTTTATTTGCTTTTATGTGGGTTTCTATGGGAACGTTGAGATTATTTGAAAAATGCATCTCCTGA 1701 0.4374 MSLASDSSPECFSKMITSMPGFRFHPTDEELVVYYLKRKMCRRKLRLDVICDTDVYKWDPEELPGQSVLKTGDRQWFFFSPRDRKYPNSARSNRATRHGYWKVTGKDRDVTYNSRAVGVKKTLVFYRGRAPNGERTDWVMHEYTLDEVELKRCPGFKDYYALYKLYKKSGPGPKNGEQYGAPFKEEEWVDDDFVDFSTNSVEREAPIQQLDGVTSVDAVTSNGQVQPLIDDEIEEFLKRIMDEHVPDQPLYPALTQVAAEETQSAVVDQFSTEVMFADPIKMFHPSSQQCDMQRSYDFTQSASSHLHVSEAPEVTSASNIQVEELLFTEDDFLEIDDLSGPAPSSSNIEKPMENLQFEDGLSELDLFHDAEMFLRDMGHIDQETVSHPYMNTFDSNIVNQDYQSQPIGEDANQTGGELWMHAYRHILSPAQHTDGSFSLPTSGVVYESASLHMPTEGNDNQSSSVGDVATSSFSSALWAFVESIPTTPASAAENALVNRAFERMSSFGRVRINVKQTNVAAGNDTTTMKRAGRKGVLFLFFPVLVALFAFMWVSMGTLRLFEKCIS 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0969 566 Pfam No apical meristem (NAM) protein 20 145 IPR003441 GO:0003677|GO:0006355
Glsi12g0969 566 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 286 - -
Glsi12g0969 566 SUPERFAMILY NAC domain 16 168 IPR036093 GO:0003677|GO:0006355
Glsi12g0969 566 Gene3D NAC domain 27 170 IPR036093 GO:0003677|GO:0006355
Glsi12g0969 566 ProSiteProfiles NAC domain profile. 18 168 IPR003441 GO:0003677|GO:0006355
Glsi12g0969 566 FunFam NAC domain-containing protein 100-like 27 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0969 Glsi-ChrGlsi12 27554081 27557456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0969 5 560 NAC Transcription Factor Family AT1G34190 46.325 8.24e-148 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi12g0969 NAM 5.1e-36 No_clan