Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0968 ATGGCCTCTTCCCAGCATCGCTGCGTTTTTGTTGGGAATATACCGTACGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGGCCTGTTGTGTCATTCAGATTAGTTATTGATAGAGAAACTGGAAAACCAAAAGGTTATGGATTCTGTGAATATAAGGATGAAGAGACAGCCCTAAGTGCCCGTCGTAACTTGCAGGGCTATGAGATCAATGGACGGCAATTGCGTGTTGATTTTGCTGAAAATGATAAAGGTTCTGACCGAAATAGAGAACAGGGGCGTGGTGGGCCTGGAATGGCAGCCAATGCTGACCCTCAGAAACAAGTCGGTGGGTCTGCTGTCCAAGGGGAAGCCGTTCACCATCAACCTATTGGTCTTCATATTGCTATAACAGCTGCAGCTGTCATGGCAGCAGCTCTAGGAGGTGCTCAGTCTGGCATCCAGTCCAATCAAAATGGTTTGCTGGGTCAGTCAGCATTGGCACATGACCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGCTGAACGAGATTATCTCCGAGCTCAAGGCAATGGCTACACAGAACAAGGAACTAGCTCGCCAGTTGTTGCTTTCTAGACCACAGTTGCCTAAAGCTCTTTTTCAGGCACAGATAATGCTAGGAATGGTGACCCCACAAGTGTTACAAATGCCGAATCTTAGGCAGGTTTCAGGTCAAACCTTACAGCCTCCGGTGGACGAAGGCCTGCTAGGTCAGCCAGCATTTTTTCAAACTCTGTCTGGGCTACCCCCTCATGCACAGAGCAAGTTGCAGTCTGGCTTGATGCCCAACATTCAAGAAGCTCAAGTCAGCACCATACCTCATAATTCTTTGGTTCCTAGTCAATTAAATGCACATCAAAAACCTCCATTGCAGCCTCGAATGCAGCTTCCACAACATCCAAGCAACCATGCTGCACAGCTAGGCACATTGCCAGGGCATTCTAATTTAACACTTTCTTCTGTGCGCCCTCAGGCTTTGGGCAATTTGTCTGTTAGACCGCCAATTCAGCTGGCAACTTCAACTTCTCTGAACCAGCATGGCTCTTTGCTACAGAATTCAGGACAGGTTGGTAGCTCAAGTGTGGGACAAAATATTCGGATGGTTCGTCCAGATGCAAGATTTCAGCCTGGCCCGTCCATATCATCAGGGATTCCTCAGTCAACTATTAGGGAAGTTGACAGATCAGCCAGAGTTCCTGAGGAGTCAAATTGGGCCAAGAAAAGTAGTATTTATTCAAATGCGCCTCTTGGATCAGTAGAGAAAACAAATGTGGTTCACGATTCTGTGGAACCGTTTAATCGCCCTTCAAAGCTAATAAAATTGGAAGGAAAGAGCACCCCTTTTCCTGCAGTAGTCACAAATGTGCCTGTCACTAAGGGTTCATCCCCAGTTCTTGGACGTAGCTCATTGCCTGTAAATGTAACTCCTCAAGCAGAAGTGCGATACTCAGAGCAACAATCTTCTCAGTCCCAGCTTCCATCTGATGTGGAATCTATTTTGCTGCAACAAGTGTTGAGTCTAACACCAGAGCAATTGAGTTCCTTGCCGCCAGAGCAGCAACAGCAGGTCATTCAGCTCCAGCAGGCTCTTCGTCGAGATCCCTCATAG 1647 0.4742 MASSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGMAANADPQKQVGGSAVQGEAVHHQPIGLHIAITAAAVMAAALGGAQSGIQSNQNGLLGQSALAHDPLTLHLAKMSRSQLNEIISELKAMATQNKELARQLLLSRPQLPKALFQAQIMLGMVTPQVLQMPNLRQVSGQTLQPPVDEGLLGQPAFFQTLSGLPPHAQSKLQSGLMPNIQEAQVSTIPHNSLVPSQLNAHQKPPLQPRMQLPQHPSNHAAQLGTLPGHSNLTLSSVRPQALGNLSVRPPIQLATSTSLNQHGSLLQNSGQVGSSSVGQNIRMVRPDARFQPGPSISSGIPQSTIREVDRSARVPEESNWAKKSSIYSNAPLGSVEKTNVVHDSVEPFNRPSKLIKLEGKSTPFPAVVTNVPVTKGSSPVLGRSSLPVNVTPQAEVRYSEQQSSQSQLPSDVESILLQQVLSLTPEQLSSLPPEQQQQVIQLQQALRRDPS 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0968 548 Gene3D - 1 119 IPR012677 -
Glsi12g0968 548 FunFam Cleavage stimulating factor 64 1 116 - -
Glsi12g0968 548 Gene3D - 149 230 - -
Glsi12g0968 548 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 546 - -
Glsi12g0968 548 MobiDBLite consensus disorder prediction 309 331 - -
Glsi12g0968 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Glsi12g0968 548 Gene3D - 508 547 IPR038192 -
Glsi12g0968 548 FunFam Cleavage stimulating factor 64 155 230 - -
Glsi12g0968 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Glsi12g0968 548 SMART rrm1_1 8 81 IPR000504 GO:0003723
Glsi12g0968 548 Pfam Transcription termination and cleavage factor C-terminal 513 545 IPR026896 GO:0031124
Glsi12g0968 548 MobiDBLite consensus disorder prediction 294 331 - -
Glsi12g0968 548 MobiDBLite consensus disorder prediction 80 119 - -
Glsi12g0968 548 Coils Coil 180 200 - -
Glsi12g0968 548 MobiDBLite consensus disorder prediction 384 409 - -
Glsi12g0968 548 Pfam Hinge domain of cleavage stimulation factor subunit 2 164 228 IPR025742 -
Glsi12g0968 548 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Glsi12g0968 548 CDD RRM_CSTF2_RNA15_like 7 83 - -
Glsi12g0968 548 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0968 Glsi-ChrGlsi12 27538786 27547639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0968 9 82 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.65e-07 52.4