Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0966 ATGAATATCTCAGTCATCATCTTACAAATACTGGGAGTTTTGTTCCTCAACAACCTCCTCGGTTGCCAGGCATATAGGCGTTATACTTTCGAGGTCAAGAATGCTTCGTACACAAAGCTATGCAGCACAAAGAACATATTGACAGTAAATGGGAAATTTCCTGGGCCAACGTTGTATGTTACCAAAGGAGAAACCATAATTGTAGATGTCTATAACAGAGCCAACGAGAGCATCACCATCCACTGGCATGGAGTGAACCAACCAAGATATCCATGGTCGGATGGTCCTGAATATGTGACTCAGTGTCCCATTCAACCTGGTCACAAATTTAGTCAGAAGGTCATCTTTTCTGAAGAGGAAGGCACTTTATGGTGGCATGCTCACAGTGACTGGTCTCGAGCCACCGTTCATGGAGCTATTGTCATCAAACCCAAGCCGGGAACAACCTACCCCTTTCCAAAACCACATGCAGAGTTCCCCATTATCTTAGGAGAGTGGTGGAAGCAAGATATCGTAGAGGTTTACAATGAGTTTCGCAAAAATGGAGGAGATCCAATGGTGTCTGATGCTTATACTATTAATGGCCAACCCGGTGATCTCTATCAATGCTCGAATTCTGAAACCTCCAAGCTAAAGGTTAGGCATGGCAAAACCTATCTTCTCCGAATGGTCAATGCAGCACTTGAGGACATTTTGTTCTTTGCCATTGCAAATCATAAACTCACAGTGGTAGGAACAGATGGAAGCTACACAAAGCCAGTGAAAGTAGATTACCTCACAATCTCTCCCGGTCAAACCATGGACGTCTTGTTAAAAGCAAACCAACCATTAGATCGTTACTATATGGCTGCTAGAGTTTATTCAAGTGCAAATGGAGTCCTTTTTAACCCCACAATCACCACTGCTATTTTACAATACCAAGGACATTACATCCCAACTTCAGCTGCCCTTTCCTTGCCTTTGCTTCCGGGCCCAGGCGACACCAATTCCTCTACCAACCTCATCAGCCAACTTAGAAGCCTGGCAGATGAGAACCACCCAATTGACGTGCCATTAGAGATAAACACGAAGCTATTCTACACGGCCTCTGTGAATTCATTGCCATGTGGGAATAATGGTTCAACATGCCAAGGCCCTGATGGGAATCGCCTCTCGGCCAGCATGAACAATGTAAGTTTCAAATTGCCAGAGTCTGACATCTTGCAGGCTTACTACAACAACAACATTAGTGGCGTCTATAGGGAGAATTTCCCAGATGTACCTCCACTGGCGTTTGATTTTACCGGTAACGATTTGTCGTCAATTCCGTTGACGCCATCGGTGGCTACAGAGGTGAAGGTGCTTGAGTATAACTCCGCAGTGGAGCTTGTTCTTCAGGGGACTAACTTGCTTGCTGGAACAGAGCACCCAATTCATTTACACGGACATAGTTTCTATGTGGTAGGATGGGGATTTGGGAACTTTGACAAAGACAAGGACCCTTTGAAGTATAATCTCATTGATCCTCCTTTTCAAAACACCGTGGCCATACCCAAAAATGGTTGGGTCACCATAAGATTCAGAACCAGAAATCCAGGAGTATGGTTCATGCACTGCCACTTAGAGCGTCATGTGACTTGGGGGATGGCTATGACTTTCATCGTCAAAAATGGGAACAATCCAGAAGAGCAGATGCTGCCACCACCACCGGACATGCCCAAATCTTATGCTGCCACTGAGCCACTTATCCCAACCCGCAAATTGATTCCTCCCCATGCTGGTGTGGGTGCAACTCCTGCGGTCTGAAGGGCTGGTGGTGGGGTTTCTACTAGAAATGCGAGGACTGATGATACAGAATCAGTGGTTGAAATGATTCTGAATGTTGGAGTTCATGACTGGGATGAAATGGAGGAGCTGATTTATTGTTATGTTGCTCTGAATTCATCAGAGCTTCATGATATTATAGGGGAAGCGTTTGTCAGTCTCTGTTGTCCGCTTTGTAATGAAGGGCTAAGCATTCATAAAGCATAG 2010 0.4522 MNISVIILQILGVLFLNNLLGCQAYRRYTFEVKNASYTKLCSTKNILTVNGKFPGPTLYVTKGETIIVDVYNRANESITIHWHGVNQPRYPWSDGPEYVTQCPIQPGHKFSQKVIFSEEEGTLWWHAHSDWSRATVHGAIVIKPKPGTTYPFPKPHAEFPIILGEWWKQDIVEVYNEFRKNGGDPMVSDAYTINGQPGDLYQCSNSETSKLKVRHGKTYLLRMVNAALEDILFFAIANHKLTVVGTDGSYTKPVKVDYLTISPGQTMDVLLKANQPLDRYYMAARVYSSANGVLFNPTITTAILQYQGHYIPTSAALSLPLLPGPGDTNSSTNLISQLRSLADENHPIDVPLEINTKLFYTASVNSLPCGNNGSTCQGPDGNRLSASMNNVSFKLPESDILQAYYNNNISGVYRENFPDVPPLAFDFTGNDLSSIPLTPSVATEVKVLEYNSAVELVLQGTNLLAGTEHPIHLHGHSFYVVGWGFGNFDKDKDPLKYNLIDPPFQNTVAIPKNGWVTIRFRTRNPGVWFMHCHLERHVTWGMAMTFIVKNGNNPEEQMLPPPPDMPKSYAATEPLIPTRKLIPPHAGVGATPAVXRAGGGVSTRNARTDDTESVVEMILNVGVHDWDEMEELIYCYVALNSSELHDIIGEAFVSLCCPLCNEGLSIHKA 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0966 669 CDD CuRO_2_LCC_plant 159 306 IPR034285 -
Glsi12g0966 669 SUPERFAMILY Cupredoxins 152 343 IPR008972 -
Glsi12g0966 669 SUPERFAMILY Cupredoxins 24 169 IPR008972 -
Glsi12g0966 669 CDD CuRO_1_LCC_plant 28 144 IPR034288 GO:0005507
Glsi12g0966 669 NCBIfam laccase 25 567 IPR017761 GO:0046274|GO:0048046|GO:0052716
Glsi12g0966 669 Pfam Transcriptional repressor, ovate 611 658 IPR006458 -
Glsi12g0966 669 ProSitePatterns Multicopper oxidases signature 1. 526 546 IPR033138 -
Glsi12g0966 669 Gene3D - 156 343 IPR008972 -
Glsi12g0966 669 PANTHER MULTI-COPPER OXIDASE 38 559 IPR045087 -
Glsi12g0966 669 ProSitePatterns Multicopper oxidases signature 2. 531 542 IPR002355 GO:0005507
Glsi12g0966 669 CDD CuRO_3_LCC_plant 412 551 IPR034289 GO:0005507
Glsi12g0966 669 ProSiteProfiles OVATE domain profile. 597 658 IPR006458 -
Glsi12g0966 669 SUPERFAMILY Cupredoxins 378 567 IPR008972 -
Glsi12g0966 669 Gene3D - 18 144 IPR008972 -
Glsi12g0966 669 Gene3D - 374 575 IPR008972 -
Glsi12g0966 669 Pfam Multicopper oxidase 158 308 IPR001117 -
Glsi12g0966 669 Pfam Multicopper oxidase 32 145 IPR011707 GO:0005507
Glsi12g0966 669 Pfam Multicopper oxidase 421 551 IPR011706 GO:0005507|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0966 Glsi-ChrGlsi12 27523125 27527957 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Glsi12g0966 Cu-oxidase 1.2e-43 CL0026