Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0948 ATGAGACTCAAATTGGAAATTCCGCTAGTACTTCTTTCTGTCGTCTTCTCCATCGCCACCATTTCAGCAGCCACCATCTCCCCTGGCTCCACCCTCTACGCTTCCAACCCGAACCAAACATGGTCTTCTCCCAACAAAACATTCTCTATGCACTTCGTTCCTGTCCAACCCCCCACTTCTCCTCCTTCCTTCATCGCCGCCATCGTCTACTCCGGCGGTGCACCCAACGTTTGGTCAGCCGGAAATGGTGTTCCCGTGGACTCCAGTGGCTCGTTCCAGTTTCTCTCATCCGGCATGCTGCGCCTCGTTAATGGGTCCGGCGCTACCGTCTGGGACTCCGGCACTTCCAATCTGGGTGTTTCCTCTGCCTCCCTAGGAGACGATGGCAACTTGGTTCTCTCCAATGAAACCGGAGTTGTTTGGTCAAGCTTCGACCATCCCACTGATACCATCGTGCCGTCTCAGAACTTCACTTCCGGTATGGTTTTGCGATCTGGGTTGTATTCGTTTAGACTTCTTAGGTCGGGTAACCTTACCCTTAGGTGGAATGATAGCTTACCGTACTGGGATGAGGGTCTGAATTCTTCGGTAAATGCGAATTTGACGTCGCCGGTTTTGGGATTGCAATCAGTTGGGATTTTGCAACTTTTTGATCCGAATTTGACAACTCCAGTGGCTGTTGCTTATAGCAGTGACTATGCAGAAGGAAGTGTTACTTTGAGAATTATTAAGTTGGATAGTGATGGAAACTTGAGAATTTATAGCTCTTCTAGAGGTAGTGGAACTGCAACTGTAAGATGGGTTGCTGTTGAAGACCAATGTGAGGTGTTTGGATACTGTGGAAACTATGGTGTTTGTAGTTACAAAGATTTAAACCCCATTTGCGGATGCCCATCTCAAAATTTTGAGATGATTGATTCCAACGATAGCAGGAAAGGGTGTAGGAGGAAGGAGAGGCTTGAGGATTGTCCGGGCAGGGTTGCCATGTTTCAACTGGACCATGCTCGAATTTTGACTTATCCTCCTACATTCATGATTAATCCGGAGGTATTTTTCATTGGTATATCAGCTTGCAGAGGAAACTGTCTTTCGGCTGATTCTTGTTTTGCTTCTACTTCCTTGTCAGATGGCACAGGACTCTGCTACATAAAGACAAGTAGTTTCATTAGTGGCTACCAGAATCCAGCACTACCCAGCACTTCATTTGTCAAGGTTTGTGGACCACCGACGCCAAATCCACCACCACCGAAGGAGGCTGAGAAGGAAAAGGATCGGGAGATACATGCTTGGATAATAGTGGTAGTCGTTCTGGGTACCCTTTTAGCTTTGATTGCCTTTGAGGGCGGATTATGGTTGTGGTGTGGTAGAAAAAGCTCCAGATTTGGAGGATTCTCTACTCAATATGCTCTTCTTGAGTATGCTTCTGGGGCACTAGTTCAGTTCTCATACAAGGAGCTCCAGCGCTCAACAAAGGGGTTCAAGGACAAGCTTGGCGATGGGGGATTTGGTGCTGTTTATAAAGGAACTCTTGTTAACGGAACTGTTGTTGCAGTGAAACAACTTGAGGGCATTGAGCAAGGTGAGAAAGAGTTTAGGATGGAGGTTGCTACTATAAGTAGTACTCATCATCTGAATTTGGTGAGGCTGATTGGCTTCTGTTCTGAAGGCCGCCATAGGCTTCTGGTATATGAGTTCATGAAAAATGGGTCTCTGGATAATTTCCTTTTTGTTAATGAAGAACAATCAGGAAAATTGTTGAGTTGGGAGTGGCGATTCAACATTACTCTGGGCACTGCAAGGGGAGTCACATACCTTCATGAGGAGTGTAGAAACTGCATTGTCCATTGTGATATAAAACCTGAAAACATTCTTTTAGATGAGAATTACAATGCCAAAATCTCAGATTTTGGCCTTGCAAAGCTCCTAAGTCCCACAGAACATAGGTACCGAACCTTAACAAGTGTAAGAGGAACTAGAGGATATTTAGCTCCAGAATGGCTTGCTAATCTTCCCATAACTTCCAAATCTGATGTCTACAGTTTTGGTATGGTTTTGTTGGAGATAGTGAGTGGAAGAAGGAATTTCGAAGTCTCAGAAGAAACAAATAGAACAAAGTTCTCCATCTGGGCTTACCAAGAGTTTCAGAAAGGAAACATCAAGGGAGTTATTGACAAGAGGCTGGCTGACCATGAAGTTAATTTAGAGCAAGTGAAAAGGGCTATTATGGTAAGCTTTTGGTGCATCCAGGAGCAGCCATCTCAGAGGCCAACAATGGGCAAAGTCTTGCGAATGCTAGAAGGCATTGCCGAGATTGAAAAGCCACCAGCCCCAAAATCTGTGACAGAAGGGTCTGTTAGTGGAACCAGTGTATATTTGAGTAGTGGCAATGCCAGTGCTATCTCCACTGTGGCAGCCTCAGTTTCAGCTTTCTCCCCATCTTCGTCATAG 2448 0.4559 MRLKLEIPLVLLSVVFSIATISAATISPGSTLYASNPNQTWSSPNKTFSMHFVPVQPPTSPPSFIAAIVYSGGAPNVWSAGNGVPVDSSGSFQFLSSGMLRLVNGSGATVWDSGTSNLGVSSASLGDDGNLVLSNETGVVWSSFDHPTDTIVPSQNFTSGMVLRSGLYSFRLLRSGNLTLRWNDSLPYWDEGLNSSVNANLTSPVLGLQSVGILQLFDPNLTTPVAVAYSSDYAEGSVTLRIIKLDSDGNLRIYSSSRGSGTATVRWVAVEDQCEVFGYCGNYGVCSYKDLNPICGCPSQNFEMIDSNDSRKGCRRKERLEDCPGRVAMFQLDHARILTYPPTFMINPEVFFIGISACRGNCLSADSCFASTSLSDGTGLCYIKTSSFISGYQNPALPSTSFVKVCGPPTPNPPPPKEAEKEKDREIHAWIIVVVVLGTLLALIAFEGGLWLWCGRKSSRFGGFSTQYALLEYASGALVQFSYKELQRSTKGFKDKLGDGGFGAVYKGTLVNGTVVAVKQLEGIEQGEKEFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDNFLFVNEEQSGKLLSWEWRFNITLGTARGVTYLHEECRNCIVHCDIKPENILLDENYNAKISDFGLAKLLSPTEHRYRTLTSVRGTRGYLAPEWLANLPITSKSDVYSFGMVLLEIVSGRRNFEVSEETNRTKFSIWAYQEFQKGNIKGVIDKRLADHEVNLEQVKRAIMVSFWCIQEQPSQRPTMGKVLRMLEGIAEIEKPPAPKSVTEGSVSGTSVYLSSGNASAISTVAASVSAFSPSSS 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0948 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 566 775 - -
Glsi12g0948 815 Pfam D-mannose binding lectin 77 158 IPR001480 -
Glsi12g0948 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 147 269 - -
Glsi12g0948 815 Pfam Protein kinase domain 494 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0948 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 146 - -
Glsi12g0948 815 PANTHER OS07G0415500 PROTEIN 8 777 - -
Glsi12g0948 815 Gene3D Phosphorylase Kinase; domain 1 463 565 - -
Glsi12g0948 815 SUPERFAMILY Protein kinase-like (PK-like) 474 766 IPR011009 -
Glsi12g0948 815 CDD B_lectin 35 147 IPR001480 -
Glsi12g0948 815 CDD STKc_IRAK 497 768 - -
Glsi12g0948 815 Gene3D Transferase(Phosphotransferase) domain 1 566 781 - -
Glsi12g0948 815 Gene3D - 146 267 IPR036426 -
Glsi12g0948 815 ProSiteProfiles Protein kinase domain profile. 491 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0948 815 SMART blect_4 31 147 IPR001480 -
Glsi12g0948 815 ProSitePatterns Protein kinases ATP-binding region signature. 497 519 IPR017441 GO:0005524
Glsi12g0948 815 ProSiteProfiles Bulb-type lectin domain profile. 17 146 IPR001480 -
Glsi12g0948 815 FunFam S-receptor-like serine/threonine-protein kinase 465 565 - -
Glsi12g0948 815 SMART serkin_6 491 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g0948 815 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 192 IPR036426 -
Glsi12g0948 815 Pfam S-locus glycoprotein domain 234 298 IPR000858 GO:0048544
Glsi12g0948 815 PIRSF SRK 1 810 IPR024171 GO:0004674
Glsi12g0948 815 Gene3D - 17 145 IPR036426 -
Glsi12g0948 815 ProSiteProfiles Bulb-type lectin domain profile. 148 266 IPR001480 -
Glsi12g0948 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0948 Glsi-ChrGlsi12 27238104 27240551 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g0948 430 775 Receptor kinase-like Gene Family AT5G20050 40.437 4.13e-81 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Glsi12g0948 Pkinase 1.3e-52 CL0016